Gene annotation
Transcriptome id Sobic.006G088900.2
Synonym Sb06g017450
Functional annotation AIG1, putative, expressed
UniProt C5YGH4
Pfam PF01926
Panther DB PTHR10903 PTHR10903:SF66
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G33970 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g36030.1 : AIG1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G057400 S-locus-like receptor protein kinase, putative, expressed -
2 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
3 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.002G028632 - -
5 Sobic.002G196000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
7 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
8 Sobic.004G121800 expansin precursor, putative, expressed -
9 Sobic.005G072900 stress responsive protein, putative, expressed -
10 Sobic.004G121600 expansin precursor, putative, expressed -
11 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
13 Sobic.005G216400 plant protein of unknown function domain containing protein, expressed -
14 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
15 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
16 Sobic.002G025500 expressed protein -
17 Sobic.002G183750 - -
18 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
19 Sobic.009G219300 expressed protein -
20 Sobic.002G323400 lipase class 3 family protein, putative, expressed -


Gene co-expression network
sample Sobic006G088900 Sobic006G088900 Sobic008G057400 Sobic008G057400 Sobic006G088900--Sobic008G057400 Sobic002G366200 Sobic002G366200 Sobic006G088900--Sobic002G366200 Sobic008G010500 Sobic008G010500 Sobic006G088900--Sobic008G010500 Sobic002G028632 Sobic002G028632 Sobic006G088900--Sobic002G028632 Sobic002G196000 Sobic002G196000 Sobic006G088900--Sobic002G196000 Sobic005G177100 Sobic005G177100 Sobic006G088900--Sobic005G177100 Sobic001G231800 Sobic001G231800 Sobic006G088900--Sobic001G231800 Sobic004G121800 Sobic004G121800 Sobic006G088900--Sobic004G121800 Sobic005G072900 Sobic005G072900 Sobic006G088900--Sobic005G072900 Sobic008G057400--Sobic008G010500 Sobic008G057400--Sobic005G177100 Sobic001G378500 Sobic001G378500 Sobic008G057400--Sobic001G378500 Sobic008G057400--Sobic002G366200 Sobic001G014700 Sobic001G014700 Sobic008G057400--Sobic001G014700 Sobic008G057400--Sobic002G028632 Sobic008G057400--Sobic001G231800 Sobic007G177400 Sobic007G177400 Sobic008G057400--Sobic007G177400 Sobic002G385500 Sobic002G385500 Sobic008G057400--Sobic002G385500 Sobic002G366200--Sobic002G028632 Sobic003G357700 Sobic003G357700 Sobic002G366200--Sobic003G357700 Sobic002G366200--Sobic007G177400 Sobic003G443700 Sobic003G443700 Sobic002G366200--Sobic003G443700 Sobic002G025500 Sobic002G025500 Sobic002G366200--Sobic002G025500 Sobic007G064500 Sobic007G064500 Sobic002G366200--Sobic007G064500 Sobic002G366200--Sobic008G010500 Sobic005G216400 Sobic005G216400 Sobic002G366200--Sobic005G216400 Sobic005G119900 Sobic005G119900 Sobic002G366200--Sobic005G119900 Sobic001G301000 Sobic001G301000 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic004G121600 Sobic004G121600 Sobic008G010500--Sobic004G121600 Sobic010G268700 Sobic010G268700 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic003G441700 Sobic003G441700 Sobic008G010500--Sobic003G441700 Sobic010G245400 Sobic010G245400 Sobic008G010500--Sobic010G245400 Sobic003G053200 Sobic003G053200 Sobic008G010500--Sobic003G053200 Sobic002G028632--Sobic002G366200 Sobic002G028632--Sobic003G357700 Sobic002G028632--Sobic003G443700 Sobic002G028632--Sobic007G177400 Sobic002G028632--Sobic005G216400 Sobic004G346300 Sobic004G346300 Sobic002G028632--Sobic004G346300 Sobic002G028632--Sobic002G025500 Sobic002G028632--Sobic007G064500 Sobic002G178101 Sobic002G178101 Sobic002G028632--Sobic002G178101 Sobic002G196000--Sobic008G010500 Sobic002G196000--Sobic004G121800 Sobic010G214300 Sobic010G214300 Sobic002G196000--Sobic010G214300 Sobic001G272800 Sobic001G272800 Sobic002G196000--Sobic001G272800 Sobic002G196000--Sobic001G231800 Sobic002G196000--Sobic004G121600 Sobic003G007400 Sobic003G007400 Sobic002G196000--Sobic003G007400 Sobic001G342000 Sobic001G342000 Sobic002G196000--Sobic001G342000 Sobic007G186500 Sobic007G186500 Sobic002G196000--Sobic007G186500 Sobic005G177100--Sobic005G206000 Sobic005G177100--Sobic007G177400 Sobic005G177100--Sobic007G064500 Sobic005G177100--Sobic008G010500 Sobic005G177100--Sobic001G231800 Sobic005G177100--Sobic004G346300 Sobic005G162400 Sobic005G162400 Sobic005G177100--Sobic005G162400 Sobic005G177100--Sobic002G366200 Sobic005G177100--Sobic010G245400 Sobic001G231800--Sobic001G301000 Sobic001G231800--Sobic008G010500 Sobic001G231800--Sobic010G245400 Sobic001G231800--Sobic005G119900 Sobic001G231800--Sobic003G441700 Sobic001G231800--Sobic004G121600 Sobic001G231800--Sobic003G053200 Sobic001G231800--Sobic010G268700 Sobic001G231800--Sobic003G357700 Sobic004G121800--Sobic004G121600 Sobic004G121800--Sobic003G441700 Sobic004G121800--Sobic003G053200 Sobic004G121800--Sobic001G272800 Sobic004G121800--Sobic008G010500 Sobic003G441800 Sobic003G441800 Sobic004G121800--Sobic003G441800 Sobic004G121800--Sobic001G301000 Sobic004G121800--Sobic001G231800 Sobic009G055300 Sobic009G055300 Sobic004G121800--Sobic009G055300 Sobic005G202300 Sobic005G202300 Sobic005G072900--Sobic005G202300 Sobic006G277700 Sobic006G277700 Sobic005G072900--Sobic006G277700 Sobic003G020200 Sobic003G020200 Sobic005G072900--Sobic003G020200 Sobic005G063400 Sobic005G063400 Sobic005G072900--Sobic005G063400 Sobic003G319400 Sobic003G319400 Sobic005G072900--Sobic003G319400 Sobic006G174300 Sobic006G174300 Sobic005G072900--Sobic006G174300 Sobic004G029400 Sobic004G029400 Sobic005G072900--Sobic004G029400 Sobic001G506800 Sobic001G506800 Sobic005G072900--Sobic001G506800 Sobic006G106900 Sobic006G106900 Sobic005G072900--Sobic006G106900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.