Gene annotation
Transcriptome id Sobic.002G323400.1
Synonym Sb02g035090
Functional annotation lipase class 3 family protein, putative, expressed
UniProt C5XA52
Pfam PF01764
Panther DB PTHR31479 PTHR31479:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006629; lipid metabolic process


Orthologs (automatic annotation)
TAIR AT5G24220 : Lipase class 3-related protein
RAP-DB (Rice) LOC_Os07g34440.1 : lipase class 3 family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK15935
Barley HORVU4Hr1G080430.1
Wheat TraesCS5D02G480900 , TraesCS5B02G480200 , TraesCS6D02G352800 , TraesCS5A02G397600 , TraesCS5B02G402300 , TraesCS4D02G332200 , TraesCS4B02G336500 , TraesCS5A02G506200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.007G064500 peptide transporter PTR2, putative, expressed -
3 Sobic.002G028632 - -
4 Sobic.002G080200 receptor protein kinase, putative, expressed -
5 Sobic.008G109300 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
6 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
7 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
8 Sobic.001G378500 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G025500 expressed protein -
10 Sobic.008G057400 S-locus-like receptor protein kinase, putative, expressed -
11 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
12 Sobic.001G187300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -
13 Sobic.002G334200 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
14 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.007G094300 tetraspanin family protein, putative, expressed -
16 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
17 Sobic.006G087300 OsCML26 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
18 Sobic.010G179900 transferase family protein, putative, expressed -
19 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.004G029300 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase


Gene co-expression network
sample Sobic002G323400 Sobic002G323400 Sobic002G366200 Sobic002G366200 Sobic002G323400--Sobic002G366200 Sobic007G064500 Sobic007G064500 Sobic002G323400--Sobic007G064500 Sobic002G028632 Sobic002G028632 Sobic002G323400--Sobic002G028632 Sobic002G080200 Sobic002G080200 Sobic002G323400--Sobic002G080200 Sobic008G109300 Sobic008G109300 Sobic002G323400--Sobic008G109300 Sobic001G014700 Sobic001G014700 Sobic002G323400--Sobic001G014700 Sobic007G177400 Sobic007G177400 Sobic002G323400--Sobic007G177400 Sobic001G378500 Sobic001G378500 Sobic002G323400--Sobic001G378500 Sobic002G025500 Sobic002G025500 Sobic002G323400--Sobic002G025500 Sobic002G366200--Sobic002G028632 Sobic003G357700 Sobic003G357700 Sobic002G366200--Sobic003G357700 Sobic002G366200--Sobic007G177400 Sobic003G443700 Sobic003G443700 Sobic002G366200--Sobic003G443700 Sobic002G366200--Sobic002G025500 Sobic002G366200--Sobic007G064500 Sobic008G010500 Sobic008G010500 Sobic002G366200--Sobic008G010500 Sobic005G216400 Sobic005G216400 Sobic002G366200--Sobic005G216400 Sobic005G119900 Sobic005G119900 Sobic002G366200--Sobic005G119900 Sobic007G064500--Sobic007G177400 Sobic007G064500--Sobic002G366200 Sobic007G064500--Sobic002G028632 Sobic005G177100 Sobic005G177100 Sobic007G064500--Sobic005G177100 Sobic007G064500--Sobic002G025500 Sobic007G064500--Sobic003G443700 Sobic007G064500--Sobic001G378500 Sobic004G346300 Sobic004G346300 Sobic007G064500--Sobic004G346300 Sobic007G064500--Sobic003G357700 Sobic002G028632--Sobic002G366200 Sobic002G028632--Sobic003G357700 Sobic002G028632--Sobic003G443700 Sobic002G028632--Sobic007G177400 Sobic002G028632--Sobic005G216400 Sobic002G028632--Sobic004G346300 Sobic002G028632--Sobic002G025500 Sobic002G028632--Sobic007G064500 Sobic002G178101 Sobic002G178101 Sobic002G028632--Sobic002G178101 Sobic002G080200--Sobic002G366200 Sobic004G003100 Sobic004G003100 Sobic002G080200--Sobic004G003100 Sobic003G280000 Sobic003G280000 Sobic002G080200--Sobic003G280000 Sobic001G232200 Sobic001G232200 Sobic002G080200--Sobic001G232200 Sobic002G080200--Sobic002G028632 Sobic001G218400 Sobic001G218400 Sobic002G080200--Sobic001G218400 Sobic001G246700 Sobic001G246700 Sobic002G080200--Sobic001G246700 Sobic002G080200--Sobic002G025500 Sobic005G166700 Sobic005G166700 Sobic002G080200--Sobic005G166700 Sobic001G414800 Sobic001G414800 Sobic008G109300--Sobic001G414800 Sobic010G191600 Sobic010G191600 Sobic008G109300--Sobic010G191600 Sobic005G097400 Sobic005G097400 Sobic008G109300--Sobic005G097400 Sobic008G109300--Sobic001G218400 Sobic005G217766 Sobic005G217766 Sobic008G109300--Sobic005G217766 Sobic003G257400 Sobic003G257400 Sobic008G109300--Sobic003G257400 Sobic008G109300--Sobic001G014700 Sobic004G029300 Sobic004G029300 Sobic008G109300--Sobic004G029300 Sobic006G133300 Sobic006G133300 Sobic008G109300--Sobic006G133300 Sobic001G014700--Sobic003G280000 Sobic001G301000 Sobic001G301000 Sobic001G014700--Sobic001G301000 Sobic001G014700--Sobic002G366200 Sobic010G147200 Sobic010G147200 Sobic001G014700--Sobic010G147200 Sobic001G014700--Sobic005G119900 Sobic003G353200 Sobic003G353200 Sobic001G014700--Sobic003G353200 Sobic005G202300 Sobic005G202300 Sobic001G014700--Sobic005G202300 Sobic008G164450 Sobic008G164450 Sobic001G014700--Sobic008G164450 Sobic001G014700--Sobic008G010500 Sobic007G177400--Sobic003G357700 Sobic007G177400--Sobic002G366200 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G177400--Sobic007G064500 Sobic007G177400--Sobic002G028632 Sobic007G177400--Sobic005G216400 Sobic003G023600 Sobic003G023600 Sobic007G177400--Sobic003G023600 Sobic007G177400--Sobic002G025500 Sobic004G228600 Sobic004G228600 Sobic001G378500--Sobic004G228600 Sobic001G378500--Sobic003G443700 Sobic001G378500--Sobic002G025500 Sobic004G002901 Sobic004G002901 Sobic001G378500--Sobic004G002901 Sobic001G378500--Sobic007G064500 Sobic001G378500--Sobic004G346300 Sobic001G378500--Sobic007G177400 Sobic007G111800 Sobic007G111800 Sobic001G378500--Sobic007G111800 Sobic009G106100 Sobic009G106100 Sobic001G378500--Sobic009G106100 Sobic002G025500--Sobic003G443700 Sobic002G025500--Sobic004G346300 Sobic002G025500--Sobic003G357700 Sobic010G268700 Sobic010G268700 Sobic002G025500--Sobic010G268700 Sobic002G025500--Sobic002G366200 Sobic005G060200 Sobic005G060200 Sobic002G025500--Sobic005G060200 Sobic002G025500--Sobic005G216400 Sobic002G025500--Sobic007G177400 Sobic002G025500--Sobic007G111800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.