Gene annotation
| Transcriptome id | Sobic.006G211400.1 |
|---|---|
| Synonym | Sb06g028210, ATKS1, KS, GA2, KS1, ATKS |
| Functional annotation | Terpenoid cyclases/Protein prenyltransferases superfamily protein( (PubMedID : 26759170,(PubMedID : 24597475) terpene synthase, putative, expressed |
| UniProt | C5YFN8 |
| Pfam | PF01397 PF03936 |
| Panther DB | PTHR31739 PTHR31739:SF3 |
| NCBI CDD | - |
| KEGG Orthology | K15793; acyclic sesquiterpene synthase |
| Gene Ontology | GO:0016829; lyase activity GO:0010333terpene synthase activity GO:0008152metabolic process GO:0000287magnesium ion binding |
Orthologs (automatic annotation)
| TAIR | AT1G79460 : Terpenoid cyclases/Protein prenyltransferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g52210.1 : terpene synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009829 , Zm00025a009826 |
| Brachypodium | KQJ84538 , KQJ84524 |
| Barley | - |
| Wheat | TraesCS2A02G425400 , TraesCS2A02G425400 , TraesCS2A02G425400 , TraesCS2A02G425400 , TraesCS2A02G425400 , TraesCS2A02G425100 , TraesCS2B02G445100 |
| Populus | PNT23463 , PNT23462 , PNT23461 , PNT23466 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G111400 | lipase, putative, expressed | - |
| 2 | Sobic.009G197600 | O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase family protein("PubMedID : 26759170,PubMedID : 24597475")@O-methyltransferase, putative, expressed | - |
| 3 | Sobic.007G057100 | expressed protein | - |
| 4 | Sobic.004G051166 | - | - |
| 5 | Sobic.001G489600 | expressed protein | - |
| 6 | Sobic.004G280900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 7 | Sobic.006G101100 | expressed protein | - |
| 8 | Sobic.008G036000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 9 | Sobic.010G036800 | expressed protein | - |
| 10 | Sobic.002G036100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | - |
| 11 | Sobic.006G026700 | expressed protein | - |
| 12 | Sobic.004G311500 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR12 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 13 | Sobic.004G084100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.001G513700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed | - |
| 15 | Sobic.004G147900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed | - |
| 16 | Sobic.009G077500 | gibberellin 2-beta-dioxygenase, putative, expressed | K04125: gibberellin 2beta-dioxygenase |
| 17 | Sobic.001G017100 | late embryogenesis abundant protein, putative, expressed | - |
| 18 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 19 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 20 | Sobic.007G151100 | 12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
Gene co-expression network
Octagon: transcription factors
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