Gene annotation
Transcriptome id Sobic.006G220500.2,Sobic.006G220500.1
Synonym GOX, Sb06g028990
Functional annotation - (PubMedID : 26976818)
hydroxyacid oxidase 1, putative, expressed
UniProt C5YG63 , C5YG56
Pfam PF01070
Panther DB PTHR10578 PTHR10578:SF74
NCBI CDD -
KEGG Orthology K11517; (S)-2-hydroxy-acid oxidase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G18360 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os04g53210.1 : hydroxyacid oxidase 1, putative, expressed
MaizeGDB (Corn) Zm00025a045035 , Zm00025a009719
Brachypodium KQK21065 , KQJ84685 , KQJ84686 , KQK21064 , PNT61883
Barley -
Wheat TraesCS2B02G490700 , TraesCS2B02G490700 , TraesCS2A02G467700 , TraesCS2D02G467700
Populus -


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cDNA sequences
Sobic.006G220500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G065500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
2 Sobic.007G120800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
3 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
4 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.003G273700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
6 Sobic.009G043500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfite oxidase, putative, expressed K00387: sulfite oxidase
7 Sobic.003G432100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
8 Sobic.001G000400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
9 Sobic.010G192432 - K14431: transcription factor TGA
10 Sobic.001G307600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
11 Sobic.009G084300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphorylase domain containing protein, putative, expressed -
12 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
13 Sobic.008G156300 kinase, pfkB family, putative, expressed K00868: pdxK, pyridoxine kinase
14 Sobic.010G220600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
15 Sobic.010G161450 - -
16 Sobic.002G372300 HD domain containing protein, putative, expressed -
17 Sobic.007G120000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
19 Sobic.003G045600 aminotransferase, classes I and II, domain containing protein, expressed -
20 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase


Gene co-expression network
sample Sobic006G220500 Sobic006G220500 Sobic007G065500 Sobic007G065500 Sobic006G220500--Sobic007G065500 Sobic007G120800 Sobic007G120800 Sobic006G220500--Sobic007G120800 Sobic002G186900 Sobic002G186900 Sobic006G220500--Sobic002G186900 Sobic007G119800 Sobic007G119800 Sobic006G220500--Sobic007G119800 Sobic003G273700 Sobic003G273700 Sobic006G220500--Sobic003G273700 Sobic009G043500 Sobic009G043500 Sobic006G220500--Sobic009G043500 Sobic003G432100 Sobic003G432100 Sobic006G220500--Sobic003G432100 Sobic001G000400 Sobic001G000400 Sobic006G220500--Sobic001G000400 Sobic010G192432 Sobic010G192432 Sobic006G220500--Sobic010G192432 Sobic007G065500--Sobic006G220500 Sobic007G065500--Sobic007G120800 Sobic002G194800 Sobic002G194800 Sobic007G065500--Sobic002G194800 Sobic006G259401 Sobic006G259401 Sobic007G065500--Sobic006G259401 Sobic009G139800 Sobic009G139800 Sobic007G065500--Sobic009G139800 Sobic007G065500--Sobic003G432100 Sobic009G234800 Sobic009G234800 Sobic007G065500--Sobic009G234800 Sobic003G428200 Sobic003G428200 Sobic007G065500--Sobic003G428200 Sobic007G065500--Sobic001G000400 Sobic002G408800 Sobic002G408800 Sobic007G120800--Sobic002G408800 Sobic002G029300 Sobic002G029300 Sobic007G120800--Sobic002G029300 Sobic007G120800--Sobic002G194800 Sobic006G056200 Sobic006G056200 Sobic007G120800--Sobic006G056200 Sobic008G156300 Sobic008G156300 Sobic007G120800--Sobic008G156300 Sobic007G173700 Sobic007G173700 Sobic007G120800--Sobic007G173700 Sobic001G161700 Sobic001G161700 Sobic007G120800--Sobic001G161700 Sobic007G120800--Sobic006G259401 Sobic007G120800--Sobic007G065500 Sobic009G059500 Sobic009G059500 Sobic002G186900--Sobic009G059500 Sobic002G271300 Sobic002G271300 Sobic002G186900--Sobic002G271300 Sobic003G096000 Sobic003G096000 Sobic002G186900--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic002G186900--Sobic010G089500 Sobic010G101600 Sobic010G101600 Sobic002G186900--Sobic010G101600 Sobic004G056400 Sobic004G056400 Sobic002G186900--Sobic004G056400 Sobic001G228200 Sobic001G228200 Sobic002G186900--Sobic001G228200 Sobic006G200000 Sobic006G200000 Sobic002G186900--Sobic006G200000 Sobic007G044400 Sobic007G044400 Sobic002G186900--Sobic007G044400 Sobic003G017601 Sobic003G017601 Sobic007G119800--Sobic003G017601 Sobic001G218500 Sobic001G218500 Sobic007G119800--Sobic001G218500 Sobic004G161900 Sobic004G161900 Sobic007G119800--Sobic004G161900 Sobic007G120000 Sobic007G120000 Sobic007G119800--Sobic007G120000 Sobic005G075600 Sobic005G075600 Sobic007G119800--Sobic005G075600 Sobic003G020500 Sobic003G020500 Sobic007G119800--Sobic003G020500 Sobic007G193200 Sobic007G193200 Sobic007G119800--Sobic007G193200 Sobic010G045400 Sobic010G045400 Sobic007G119800--Sobic010G045400 Sobic001G454900 Sobic001G454900 Sobic007G119800--Sobic001G454900 Sobic001G302500 Sobic001G302500 Sobic003G273700--Sobic001G302500 Sobic003G273700--Sobic010G192432 Sobic010G194100 Sobic010G194100 Sobic003G273700--Sobic010G194100 Sobic006G230300 Sobic006G230300 Sobic003G273700--Sobic006G230300 Sobic002G283900 Sobic002G283900 Sobic003G273700--Sobic002G283900 Sobic007G221100 Sobic007G221100 Sobic003G273700--Sobic007G221100 Sobic003G389000 Sobic003G389000 Sobic003G273700--Sobic003G389000 Sobic001G456100 Sobic001G456100 Sobic003G273700--Sobic001G456100 Sobic010G161450 Sobic010G161450 Sobic003G273700--Sobic010G161450 Sobic009G043500--Sobic002G186900 Sobic002G159900 Sobic002G159900 Sobic009G043500--Sobic002G159900 Sobic003G306900 Sobic003G306900 Sobic009G043500--Sobic003G306900 Sobic003G326800 Sobic003G326800 Sobic009G043500--Sobic003G326800 Sobic010G091300 Sobic010G091300 Sobic009G043500--Sobic010G091300 Sobic009G043500--Sobic006G220500 Sobic001G397000 Sobic001G397000 Sobic009G043500--Sobic001G397000 Sobic003G312400 Sobic003G312400 Sobic009G043500--Sobic003G312400 Sobic004G033500 Sobic004G033500 Sobic009G043500--Sobic004G033500 Sobic010G220600 Sobic010G220600 Sobic003G432100--Sobic010G220600 Sobic002G306700 Sobic002G306700 Sobic003G432100--Sobic002G306700 Sobic003G432100--Sobic009G139800 Sobic003G348800 Sobic003G348800 Sobic003G432100--Sobic003G348800 Sobic003G432100--Sobic010G161450 Sobic003G432100--Sobic002G194800 Sobic003G432100--Sobic007G065500 Sobic003G092700 Sobic003G092700 Sobic003G432100--Sobic003G092700 Sobic001G109300 Sobic001G109300 Sobic003G432100--Sobic001G109300 Sobic001G000400--Sobic006G259401 Sobic003G045600 Sobic003G045600 Sobic001G000400--Sobic003G045600 Sobic009G083800 Sobic009G083800 Sobic001G000400--Sobic009G083800 Sobic001G000400--Sobic007G119800 Sobic001G000400--Sobic006G220500 Sobic001G000400--Sobic007G065500 Sobic002G283100 Sobic002G283100 Sobic001G000400--Sobic002G283100 Sobic003G169900 Sobic003G169900 Sobic001G000400--Sobic003G169900 Sobic001G458800 Sobic001G458800 Sobic001G000400--Sobic001G458800 Sobic010G192366 Sobic010G192366 Sobic010G192432--Sobic010G192366 Sobic004G078800 Sobic004G078800 Sobic010G192432--Sobic004G078800 Sobic003G227700 Sobic003G227700 Sobic010G192432--Sobic003G227700 Sobic001G483600 Sobic001G483600 Sobic010G192432--Sobic001G483600 Sobic001G067100 Sobic001G067100 Sobic010G192432--Sobic001G067100 Sobic006G135300 Sobic006G135300 Sobic010G192432--Sobic006G135300 Sobic010G097200 Sobic010G097200 Sobic010G192432--Sobic010G097200 Sobic010G071400 Sobic010G071400 Sobic010G192432--Sobic010G071400 Sobic007G100700 Sobic007G100700 Sobic010G192432--Sobic007G100700
Octagon: transcription factors


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