Gene annotation
Transcriptome id Sobic.001G000400.3,Sobic.001G000400.6,Sobic.001G000400.1,Sobic.001G000400.4,Sobic.001G000400.2,Sobic.001G000400.5
Synonym Sb01g000220, PDR11, ATPDR11
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
pleiotropic drug resistance protein, putative, expressed
UniProt A0A1B6QGM5 , A0A1Z5S3Q5 , A0A1B6QGK5 , A0A1Z5S3P1
Pfam PF08370 PF00005 PF01061 PF14510 PF08370 PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF214
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT2G36380 : pleiotropic drug resistance 6,pleiotropic drug resistance 11
RAP-DB (Rice) LOC_Os11g37700.1 : pleiotropic drug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a036026 , Zm00025a009171 , Zm00025a055596
Brachypodium KQK15967 , KQK15968 , KQK18013 , KQK18012 , KQK11911 , KQK11913 , KQK11912
Barley HORVU7Hr1G037750.7 , HORVU7Hr1G037750.6 , HORVU7Hr1G037750.4 , HORVU7Hr1G037750.1 , HORVU5Hr1G106850.34 , HORVU5Hr1G106850.33 , HORVU5Hr1G106850.32 , HORVU5Hr1G106850.30 , HORVU5Hr1G106850.37 , HORVU5Hr1G106850.36 , HORVU5Hr1G106850.35 , HORVU5Hr1G106850.20 , HORVU5Hr1G106850.21 , HORVU5Hr1G106850.22 , HORVU5Hr1G106850.23 , HORVU5Hr1G106850.24 , HORVU5Hr1G106850.25 , HORVU5Hr1G106850.26 , HORVU5Hr1G106850.27 , HORVU5Hr1G106850.28 , HORVU5Hr1G106850.29 , HORVU5Hr1G106850.15 , HORVU5Hr1G106850.14 , HORVU5Hr1G106850.17 , HORVU5Hr1G106850.16 , HORVU5Hr1G106850.11 , HORVU5Hr1G106850.10 , HORVU5Hr1G106850.13 , HORVU5Hr1G106850.12 , HORVU5Hr1G106850.19 , HORVU5Hr1G106850.18 , HORVU5Hr1G056280.41 , HORVU5Hr1G056280.40 , HORVU7Hr1G037750.19 , HORVU7Hr1G037750.18 , HORVU7Hr1G037750.17 , HORVU7Hr1G037750.16 , HORVU7Hr1G037750.15 , HORVU7Hr1G037750.14 , HORVU7Hr1G037750.13 , HORVU7Hr1G037750.12 , HORVU7Hr1G037750.11 , HORVU7Hr1G037750.10 , HORVU5Hr1G106850.1 , HORVU5Hr1G106850.3 , HORVU5Hr1G106850.2 , HORVU5Hr1G106850.5 , HORVU5Hr1G106850.4 , HORVU5Hr1G106850.7 , HORVU5Hr1G106850.6 , HORVU5Hr1G106850.9 , HORVU5Hr1G106850.8 , HORVU5Hr1G124650.9 , HORVU5Hr1G124650.8 , HORVU5Hr1G124650.7 , HORVU5Hr1G124650.6 , HORVU5Hr1G124650.5 , HORVU5Hr1G124650.4 , HORVU5Hr1G124650.3 , HORVU7Hr1G037750.5 , HORVU7Hr1G037750.3 , HORVU7Hr1G037750.2 , HORVU7Hr1G037750.9 , HORVU7Hr1G037750.8 , HORVU5Hr1G056280.10 , HORVU5Hr1G056280.11 , HORVU5Hr1G056280.12 , HORVU5Hr1G056280.13 , HORVU5Hr1G056280.14 , HORVU5Hr1G056280.15 , HORVU5Hr1G056280.16 , HORVU5Hr1G056280.17 , HORVU5Hr1G056280.18 , HORVU5Hr1G056280.19 , HORVU5Hr1G124650.15 , HORVU5Hr1G124650.14 , HORVU5Hr1G124650.13 , HORVU5Hr1G124650.12 , HORVU5Hr1G124650.11 , HORVU5Hr1G124650.10 , HORVU7Hr1G037750.31 , HORVU7Hr1G037750.30 , HORVU7Hr1G037750.32 , HORVU7Hr1G037750.35 , HORVU7Hr1G037750.34 , HORVU5Hr1G056280.25 , HORVU5Hr1G056280.24 , HORVU5Hr1G056280.27 , HORVU5Hr1G056280.26 , HORVU5Hr1G056280.21 , HORVU5Hr1G056280.20 , HORVU5Hr1G056280.23 , HORVU5Hr1G056280.22 , HORVU5Hr1G056280.29 , HORVU5Hr1G056280.28 , HORVU7Hr1G037750.26 , HORVU7Hr1G037750.27 , HORVU7Hr1G037750.24 , HORVU7Hr1G037750.25 , HORVU7Hr1G037750.22 , HORVU7Hr1G037750.23 , HORVU7Hr1G037750.20 , HORVU7Hr1G037750.21 , HORVU7Hr1G037750.28 , HORVU7Hr1G037750.29 , HORVU5Hr1G056280.38 , HORVU5Hr1G056280.39 , HORVU5Hr1G056280.32 , HORVU5Hr1G056280.33 , HORVU5Hr1G056280.30 , HORVU5Hr1G056280.31 , HORVU5Hr1G056280.36 , HORVU5Hr1G056280.37 , HORVU5Hr1G056280.34 , HORVU5Hr1G056280.35 , HORVU5Hr1G056280.3 , HORVU5Hr1G056280.6 , HORVU5Hr1G056280.7 , HORVU5Hr1G056280.4 , HORVU5Hr1G056280.5 , HORVU5Hr1G056280.8 , HORVU5Hr1G056280.9
Wheat TraesCS5A02G447200 , TraesCS7D02G185700 , TraesCS7D02G185700 , TraesCS5B02G449500 , TraesCS5A02G016200 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS4A02G331100 , TraesCS7B02G088800 , TraesCS5D02G190600 , TraesCS5D02G190600 , TraesCS5D02G190600 , TraesCS5D02G023400 , TraesCS5D02G564000 , TraesCS5D02G452500 , TraesCS7A02G183900 , TraesCS5A02G185500 , TraesCS5A02G185500 , TraesCS7B02G000200 , TraesCS5B02G572600 , TraesCS2B02G606700 , TraesCS2B02G606700
Populus -


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cDNA sequences
Sobic.001G000400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G259401 - K06130: lysophospholipase II
2 Sobic.003G045600 aminotransferase, classes I and II, domain containing protein, expressed -
3 Sobic.009G083800 MYB family transcription factor, putative, expressed -
4 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.006G220500 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
6 Sobic.007G065500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
7 Sobic.002G283100 josephin, putative, expressed -
8 Sobic.003G169900 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
9 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
10 Sobic.001G140000 early-responsive to dehydration protein-related, putative, expressed -
11 Sobic.001G392200 CAS1 domain-containing protein 1 precursor, putative, expressed -
12 Sobic.008G113600 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
13 Sobic.004G257000 transmembrane 9 superfamily member, putative, expressed -
14 Sobic.007G034100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.003G326800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
17 Sobic.003G273700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
18 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
19 Sobic.002G055200 GTP binding protein, putative, expressed -
20 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7


Gene co-expression network
sample Sobic001G000400 Sobic001G000400 Sobic006G259401 Sobic006G259401 Sobic001G000400--Sobic006G259401 Sobic003G045600 Sobic003G045600 Sobic001G000400--Sobic003G045600 Sobic009G083800 Sobic009G083800 Sobic001G000400--Sobic009G083800 Sobic007G119800 Sobic007G119800 Sobic001G000400--Sobic007G119800 Sobic006G220500 Sobic006G220500 Sobic001G000400--Sobic006G220500 Sobic007G065500 Sobic007G065500 Sobic001G000400--Sobic007G065500 Sobic002G283100 Sobic002G283100 Sobic001G000400--Sobic002G283100 Sobic003G169900 Sobic003G169900 Sobic001G000400--Sobic003G169900 Sobic001G458800 Sobic001G458800 Sobic001G000400--Sobic001G458800 Sobic006G259401--Sobic003G045600 Sobic008G151500 Sobic008G151500 Sobic006G259401--Sobic008G151500 Sobic003G236800 Sobic003G236800 Sobic006G259401--Sobic003G236800 Sobic002G101300 Sobic002G101300 Sobic006G259401--Sobic002G101300 Sobic007G120800 Sobic007G120800 Sobic006G259401--Sobic007G120800 Sobic001G140000 Sobic001G140000 Sobic006G259401--Sobic001G140000 Sobic006G259401--Sobic002G283100 Sobic001G392200 Sobic001G392200 Sobic006G259401--Sobic001G392200 Sobic007G179900 Sobic007G179900 Sobic006G259401--Sobic007G179900 Sobic003G045600--Sobic006G259401 Sobic003G045600--Sobic003G236800 Sobic003G045600--Sobic002G101300 Sobic004G079700 Sobic004G079700 Sobic003G045600--Sobic004G079700 Sobic002G153100 Sobic002G153100 Sobic003G045600--Sobic002G153100 Sobic003G045600--Sobic001G140000 Sobic003G045600--Sobic007G119800 Sobic002G274600 Sobic002G274600 Sobic003G045600--Sobic002G274600 Sobic003G045600--Sobic008G151500 Sobic002G070300 Sobic002G070300 Sobic009G083800--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic009G083800--Sobic008G132200 Sobic007G048700 Sobic007G048700 Sobic009G083800--Sobic007G048700 Sobic009G083800--Sobic003G169900 Sobic009G083800--Sobic003G236800 Sobic009G083800--Sobic001G458800 Sobic009G083800--Sobic001G392200 Sobic002G055200 Sobic002G055200 Sobic009G083800--Sobic002G055200 Sobic003G196200 Sobic003G196200 Sobic009G083800--Sobic003G196200 Sobic003G017601 Sobic003G017601 Sobic007G119800--Sobic003G017601 Sobic001G218500 Sobic001G218500 Sobic007G119800--Sobic001G218500 Sobic004G161900 Sobic004G161900 Sobic007G119800--Sobic004G161900 Sobic007G120000 Sobic007G120000 Sobic007G119800--Sobic007G120000 Sobic005G075600 Sobic005G075600 Sobic007G119800--Sobic005G075600 Sobic003G020500 Sobic003G020500 Sobic007G119800--Sobic003G020500 Sobic007G193200 Sobic007G193200 Sobic007G119800--Sobic007G193200 Sobic010G045400 Sobic010G045400 Sobic007G119800--Sobic010G045400 Sobic001G454900 Sobic001G454900 Sobic007G119800--Sobic001G454900 Sobic006G220500--Sobic007G065500 Sobic006G220500--Sobic007G120800 Sobic002G186900 Sobic002G186900 Sobic006G220500--Sobic002G186900 Sobic006G220500--Sobic007G119800 Sobic003G273700 Sobic003G273700 Sobic006G220500--Sobic003G273700 Sobic009G043500 Sobic009G043500 Sobic006G220500--Sobic009G043500 Sobic003G432100 Sobic003G432100 Sobic006G220500--Sobic003G432100 Sobic006G220500--Sobic001G000400 Sobic010G192432 Sobic010G192432 Sobic006G220500--Sobic010G192432 Sobic007G065500--Sobic006G220500 Sobic007G065500--Sobic007G120800 Sobic002G194800 Sobic002G194800 Sobic007G065500--Sobic002G194800 Sobic007G065500--Sobic006G259401 Sobic009G139800 Sobic009G139800 Sobic007G065500--Sobic009G139800 Sobic007G065500--Sobic003G432100 Sobic009G234800 Sobic009G234800 Sobic007G065500--Sobic009G234800 Sobic003G428200 Sobic003G428200 Sobic007G065500--Sobic003G428200 Sobic007G065500--Sobic001G000400 Sobic002G283100--Sobic006G259401 Sobic010G122100 Sobic010G122100 Sobic002G283100--Sobic010G122100 Sobic002G283100--Sobic003G236800 Sobic001G239900 Sobic001G239900 Sobic002G283100--Sobic001G239900 Sobic002G201700 Sobic002G201700 Sobic002G283100--Sobic002G201700 Sobic002G283100--Sobic008G151500 Sobic002G283100--Sobic009G083800 Sobic002G283100--Sobic001G000400 Sobic004G107000 Sobic004G107000 Sobic002G283100--Sobic004G107000 Sobic008G113600 Sobic008G113600 Sobic003G169900--Sobic008G113600 Sobic001G338400 Sobic001G338400 Sobic003G169900--Sobic001G338400 Sobic008G150300 Sobic008G150300 Sobic003G169900--Sobic008G150300 Sobic003G169900--Sobic001G458800 Sobic001G077900 Sobic001G077900 Sobic003G169900--Sobic001G077900 Sobic003G169900--Sobic003G196200 Sobic008G072200 Sobic008G072200 Sobic003G169900--Sobic008G072200 Sobic001G458700 Sobic001G458700 Sobic003G169900--Sobic001G458700 Sobic003G348800 Sobic003G348800 Sobic003G169900--Sobic003G348800 Sobic003G034900 Sobic003G034900 Sobic001G458800--Sobic003G034900 Sobic009G224400 Sobic009G224400 Sobic001G458800--Sobic009G224400 Sobic006G058900 Sobic006G058900 Sobic001G458800--Sobic006G058900 Sobic001G115700 Sobic001G115700 Sobic001G458800--Sobic001G115700 Sobic007G171500 Sobic007G171500 Sobic001G458800--Sobic007G171500 Sobic001G073600 Sobic001G073600 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic002G395000 Sobic002G395000 Sobic001G458800--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic001G458800--Sobic001G031900
Octagon: transcription factors


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