Gene annotation
Transcriptome id Sobic.006G246350.1
Synonym -
Functional annotation -
UniProt A0A1B6PNI5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G116000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Granule -bound starch synthase 1b (Os)(PubMedID : 27208977)@"GbssIIa(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659853)@starch synthase, putative, expressed K13679: granule-bound starch synthase
2 Sobic.004G267000 RAD-like 6(PubMedID : 26465154)@MYB family transcription factor, putative, expressed -
3 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.007G046950 - -
5 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
6 Sobic.004G166000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
7 Sobic.008G180800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
8 Sobic.003G241900 expressed protein -
9 Sobic.005G127800 expressed protein -
10 Sobic.007G004850 - -
11 Sobic.001G178250 - -
12 Sobic.003G313900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
13 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
14 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
15 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
16 Sobic.010G047700 starch synthase, putative, expressed K00703: starch synthase
17 Sobic.004G113100 "OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659881)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
18 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
19 Sobic.009G054900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@relA-SpoT like protein RSH4, putative, expressed -
20 Sobic.006G006700 - -


Gene co-expression network
sample Sobic006G246350 Sobic006G246350 Sobic002G116000 Sobic002G116000 Sobic006G246350--Sobic002G116000 Sobic004G267000 Sobic004G267000 Sobic006G246350--Sobic004G267000 Sobic001G076900 Sobic001G076900 Sobic006G246350--Sobic001G076900 Sobic007G046950 Sobic007G046950 Sobic006G246350--Sobic007G046950 Sobic005G056400 Sobic005G056400 Sobic006G246350--Sobic005G056400 Sobic004G166000 Sobic004G166000 Sobic006G246350--Sobic004G166000 Sobic008G180800 Sobic008G180800 Sobic006G246350--Sobic008G180800 Sobic003G241900 Sobic003G241900 Sobic006G246350--Sobic003G241900 Sobic005G127800 Sobic005G127800 Sobic006G246350--Sobic005G127800 Sobic002G116000--Sobic008G180800 Sobic008G149100 Sobic008G149100 Sobic002G116000--Sobic008G149100 Sobic002G116000--Sobic007G046950 Sobic002G047400 Sobic002G047400 Sobic002G116000--Sobic002G047400 Sobic001G104600 Sobic001G104600 Sobic002G116000--Sobic001G104600 Sobic002G116000--Sobic005G056400 Sobic010G104700 Sobic010G104700 Sobic002G116000--Sobic010G104700 Sobic010G101000 Sobic010G101000 Sobic002G116000--Sobic010G101000 Sobic001G046000 Sobic001G046000 Sobic002G116000--Sobic001G046000 Sobic009G244300 Sobic009G244300 Sobic004G267000--Sobic009G244300 Sobic009G244600 Sobic009G244600 Sobic004G267000--Sobic009G244600 Sobic003G231800 Sobic003G231800 Sobic004G267000--Sobic003G231800 Sobic004G267000--Sobic003G241900 Sobic004G267000--Sobic001G076900 Sobic004G267000--Sobic005G056400 Sobic004G267000--Sobic002G116000 Sobic004G305800 Sobic004G305800 Sobic004G267000--Sobic004G305800 Sobic007G004850 Sobic007G004850 Sobic004G267000--Sobic007G004850 Sobic001G076900--Sobic005G056400 Sobic003G370000 Sobic003G370000 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G020100 Sobic001G020100 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic002G370600 Sobic002G370600 Sobic001G076900--Sobic002G370600 Sobic004G283100 Sobic004G283100 Sobic001G076900--Sobic004G283100 Sobic007G046950--Sobic001G104600 Sobic001G015200 Sobic001G015200 Sobic007G046950--Sobic001G015200 Sobic007G046950--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic007G046950--Sobic002G030900 Sobic002G060800 Sobic002G060800 Sobic007G046950--Sobic002G060800 Sobic001G104700 Sobic001G104700 Sobic007G046950--Sobic001G104700 Sobic007G046950--Sobic002G047400 Sobic003G103300 Sobic003G103300 Sobic007G046950--Sobic003G103300 Sobic004G125800 Sobic004G125800 Sobic007G046950--Sobic004G125800 Sobic007G161500 Sobic007G161500 Sobic005G056400--Sobic007G161500 Sobic005G056400--Sobic004G305800 Sobic003G127800 Sobic003G127800 Sobic005G056400--Sobic003G127800 Sobic005G056400--Sobic003G370000 Sobic010G188300 Sobic010G188300 Sobic005G056400--Sobic010G188300 Sobic005G056400--Sobic001G076900 Sobic001G491000 Sobic001G491000 Sobic005G056400--Sobic001G491000 Sobic001G329400 Sobic001G329400 Sobic005G056400--Sobic001G329400 Sobic006G057866 Sobic006G057866 Sobic005G056400--Sobic006G057866 Sobic004G095000 Sobic004G095000 Sobic004G166000--Sobic004G095000 Sobic003G036100 Sobic003G036100 Sobic004G166000--Sobic003G036100 Sobic001G189100 Sobic001G189100 Sobic004G166000--Sobic001G189100 Sobic003G237600 Sobic003G237600 Sobic004G166000--Sobic003G237600 Sobic009G254600 Sobic009G254600 Sobic004G166000--Sobic009G254600 Sobic001G355600 Sobic001G355600 Sobic004G166000--Sobic001G355600 Sobic009G222200 Sobic009G222200 Sobic004G166000--Sobic009G222200 Sobic010G030800 Sobic010G030800 Sobic004G166000--Sobic010G030800 Sobic008G180800--Sobic010G104700 Sobic008G180800--Sobic002G116000 Sobic008G180800--Sobic010G101000 Sobic003G428600 Sobic003G428600 Sobic008G180800--Sobic003G428600 Sobic008G180800--Sobic001G046000 Sobic008G180800--Sobic002G047400 Sobic009G225600 Sobic009G225600 Sobic008G180800--Sobic009G225600 Sobic008G180800--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic008G180800--Sobic003G186800 Sobic003G241900--Sobic009G244300 Sobic010G153900 Sobic010G153900 Sobic003G241900--Sobic010G153900 Sobic002G421300 Sobic002G421300 Sobic003G241900--Sobic002G421300 Sobic003G241900--Sobic004G267000 Sobic003G241900--Sobic003G231800 Sobic007G034300 Sobic007G034300 Sobic003G241900--Sobic007G034300 Sobic003G241900--Sobic004G305800 Sobic003G241900--Sobic001G076900 Sobic010G201700 Sobic010G201700 Sobic003G241900--Sobic010G201700 Sobic005G127800--Sobic007G046950 Sobic004G113100 Sobic004G113100 Sobic005G127800--Sobic004G113100 Sobic002G412100 Sobic002G412100 Sobic005G127800--Sobic002G412100 Sobic005G127800--Sobic002G060800 Sobic005G127800--Sobic001G104600 Sobic006G259600 Sobic006G259600 Sobic005G127800--Sobic006G259600 Sobic003G026600 Sobic003G026600 Sobic005G127800--Sobic003G026600 Sobic003G166200 Sobic003G166200 Sobic005G127800--Sobic003G166200 Sobic005G127800--Sobic001G046000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.