Gene annotation
Transcriptome id Sobic.007G072133.1
Synonym -
Functional annotation -
UniProt A0A1Z5R8G0
Pfam PF02892 PF03106
Panther DB PTHR23272 PTHR23272:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G42170 : BED zinc finger ;hAT family dimerisation domain
RAP-DB (Rice) LOC_Os08g09810.1 : WRKY106, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G032700 "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)"(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PSBR -photosystem II subunit R (At)(PubMedID : 27208977)@photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
2 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.009G016600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.006G003400 expressed protein -
5 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
6 Sobic.004G357200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
8 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
9 Sobic.006G182000 helix-loop-helix DNA-binding protein, putative, expressed -
10 Sobic.001G411800 - -
11 Sobic.008G024600 expressed protein -
12 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
13 Sobic.009G008400 - -
14 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
15 Sobic.001G235900 white-brown complex homolog protein, putative, expressed -
16 Sobic.006G076800 serine/threonine-protein kinase receptor precursor, putative, expressed -
17 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
18 Sobic.009G211000 phosphotransferase, putative, expressed K14156: choline/ethanolamine kinase
19 Sobic.001G151500 choline transporter-related, putative, expressed -
20 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase


Gene co-expression network
sample Sobic007G072133 Sobic007G072133 Sobic002G032700 Sobic002G032700 Sobic007G072133--Sobic002G032700 Sobic001G178700 Sobic001G178700 Sobic007G072133--Sobic001G178700 Sobic009G016600 Sobic009G016600 Sobic007G072133--Sobic009G016600 Sobic006G003400 Sobic006G003400 Sobic007G072133--Sobic006G003400 Sobic001G248300 Sobic001G248300 Sobic007G072133--Sobic001G248300 Sobic004G357200 Sobic004G357200 Sobic007G072133--Sobic004G357200 Sobic002G188500 Sobic002G188500 Sobic007G072133--Sobic002G188500 Sobic004G037900 Sobic004G037900 Sobic007G072133--Sobic004G037900 Sobic006G182000 Sobic006G182000 Sobic007G072133--Sobic006G182000 Sobic002G032700--Sobic006G003400 Sobic002G281500 Sobic002G281500 Sobic002G032700--Sobic002G281500 Sobic009G211000 Sobic009G211000 Sobic002G032700--Sobic009G211000 Sobic002G403500 Sobic002G403500 Sobic002G032700--Sobic002G403500 Sobic001G176600 Sobic001G176600 Sobic002G032700--Sobic001G176600 Sobic002G032700--Sobic001G248300 Sobic005G209100 Sobic005G209100 Sobic002G032700--Sobic005G209100 Sobic002G169900 Sobic002G169900 Sobic002G032700--Sobic002G169900 Sobic001G438600 Sobic001G438600 Sobic002G032700--Sobic001G438600 Sobic004G113400 Sobic004G113400 Sobic001G178700--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G178700--Sobic009G010600 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G474600 Sobic001G474600 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic010G112000 Sobic010G112000 Sobic001G178700--Sobic010G112000 Sobic007G172400 Sobic007G172400 Sobic001G178700--Sobic007G172400 Sobic004G329400 Sobic004G329400 Sobic001G178700--Sobic004G329400 Sobic010G192800 Sobic010G192800 Sobic009G016600--Sobic010G192800 Sobic007G084300 Sobic007G084300 Sobic009G016600--Sobic007G084300 Sobic009G016600--Sobic009G211000 Sobic002G249300 Sobic002G249300 Sobic009G016600--Sobic002G249300 Sobic002G165140 Sobic002G165140 Sobic009G016600--Sobic002G165140 Sobic006G143000 Sobic006G143000 Sobic009G016600--Sobic006G143000 Sobic007G063300 Sobic007G063300 Sobic009G016600--Sobic007G063300 Sobic003G174301 Sobic003G174301 Sobic009G016600--Sobic003G174301 Sobic009G226600 Sobic009G226600 Sobic009G016600--Sobic009G226600 Sobic004G052900 Sobic004G052900 Sobic006G003400--Sobic004G052900 Sobic006G003400--Sobic001G248300 Sobic002G340100 Sobic002G340100 Sobic006G003400--Sobic002G340100 Sobic004G355000 Sobic004G355000 Sobic006G003400--Sobic004G355000 Sobic006G138400 Sobic006G138400 Sobic006G003400--Sobic006G138400 Sobic001G292200 Sobic001G292200 Sobic006G003400--Sobic001G292200 Sobic006G003400--Sobic001G178700 Sobic006G003400--Sobic002G032700 Sobic003G407300 Sobic003G407300 Sobic006G003400--Sobic003G407300 Sobic001G248300--Sobic004G355000 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic009G094300 Sobic009G094300 Sobic001G248300--Sobic009G094300 Sobic001G248300--Sobic010G112000 Sobic001G248300--Sobic004G329400 Sobic001G248300--Sobic004G113400 Sobic006G145000 Sobic006G145000 Sobic004G357200--Sobic006G145000 Sobic008G024600 Sobic008G024600 Sobic004G357200--Sobic008G024600 Sobic006G021250 Sobic006G021250 Sobic004G357200--Sobic006G021250 Sobic009G040700 Sobic009G040700 Sobic004G357200--Sobic009G040700 Sobic001G543800 Sobic001G543800 Sobic004G357200--Sobic001G543800 Sobic007G096000 Sobic007G096000 Sobic004G357200--Sobic007G096000 Sobic003G113200 Sobic003G113200 Sobic004G357200--Sobic003G113200 Sobic006G128900 Sobic006G128900 Sobic004G357200--Sobic006G128900 Sobic003G280800 Sobic003G280800 Sobic004G357200--Sobic003G280800 Sobic009G235900 Sobic009G235900 Sobic002G188500--Sobic009G235900 Sobic003G005800 Sobic003G005800 Sobic002G188500--Sobic003G005800 Sobic002G188500--Sobic004G037900 Sobic001G498200 Sobic001G498200 Sobic002G188500--Sobic001G498200 Sobic001G194900 Sobic001G194900 Sobic002G188500--Sobic001G194900 Sobic002G188500--Sobic006G138400 Sobic003G145900 Sobic003G145900 Sobic002G188500--Sobic003G145900 Sobic008G160700 Sobic008G160700 Sobic002G188500--Sobic008G160700 Sobic001G490000 Sobic001G490000 Sobic002G188500--Sobic001G490000 Sobic001G151500 Sobic001G151500 Sobic004G037900--Sobic001G151500 Sobic004G037900--Sobic002G188500 Sobic004G037900--Sobic008G160700 Sobic004G037900--Sobic001G490000 Sobic010G001600 Sobic010G001600 Sobic004G037900--Sobic010G001600 Sobic004G037900--Sobic003G005800 Sobic009G119200 Sobic009G119200 Sobic004G037900--Sobic009G119200 Sobic004G037900--Sobic003G145900 Sobic004G037900--Sobic009G235900 Sobic006G182000--Sobic009G226600 Sobic002G087800 Sobic002G087800 Sobic006G182000--Sobic002G087800 Sobic004G321800 Sobic004G321800 Sobic006G182000--Sobic004G321800 Sobic003G087200 Sobic003G087200 Sobic006G182000--Sobic003G087200 Sobic006G181300 Sobic006G181300 Sobic006G182000--Sobic006G181300 Sobic009G057300 Sobic009G057300 Sobic006G182000--Sobic009G057300 Sobic006G100332 Sobic006G100332 Sobic006G182000--Sobic006G100332 Sobic001G325200 Sobic001G325200 Sobic006G182000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic006G182000--Sobic001G150600
Octagon: transcription factors


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