Gene annotation
Transcriptome id Sobic.007G147101.3,Sobic.007G147101.2,Sobic.007G147101.4,Sobic.007G147101.1
Synonym -
Functional annotation -
UniProt A0A1Z5RAV5
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF142
NCBI CDD -
KEGG Orthology K11975; E3 ubiquitin-protein ligase RNF144
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G14250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g35070.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a030733
Brachypodium -
Barley HORVU0Hr1G023490.2 , HORVU0Hr1G023490.1
Wheat TraesCS6D02G230700 , TraesCS6A02G248600 , TraesCS6B02G138600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091701 - -
2 Sobic.006G254200 OsDegp11 - Putative Deg protease homologue, expressed -
3 Sobic.003G325600 expressed protein -
4 Sobic.008G024100 AT hook motif family protein, expressed -
5 Sobic.004G062600 OsFBX154 - F-box domain containing protein, expressed -
6 Sobic.004G117400 expressed protein -
7 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
8 Sobic.005G002800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fatty acid desaturase, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
9 Sobic.004G302100 expressed protein -
10 Sobic.005G133133 - -
11 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
12 Sobic.001G171001 - -
13 Sobic.005G212100 powdery mildew resistance protein PM3b, putative, expressed -
14 Sobic.007G102300 formin, putative, expressed -
15 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
16 Sobic.002G322700 expressed protein -
17 Sobic.003G214850 - -
18 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
19 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
20 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless


Gene co-expression network
sample Sobic007G147101 Sobic007G147101 Sobic001G091701 Sobic001G091701 Sobic007G147101--Sobic001G091701 Sobic006G254200 Sobic006G254200 Sobic007G147101--Sobic006G254200 Sobic003G325600 Sobic003G325600 Sobic007G147101--Sobic003G325600 Sobic008G024100 Sobic008G024100 Sobic007G147101--Sobic008G024100 Sobic004G062600 Sobic004G062600 Sobic007G147101--Sobic004G062600 Sobic004G117400 Sobic004G117400 Sobic007G147101--Sobic004G117400 Sobic003G396500 Sobic003G396500 Sobic007G147101--Sobic003G396500 Sobic005G002800 Sobic005G002800 Sobic007G147101--Sobic005G002800 Sobic004G302100 Sobic004G302100 Sobic007G147101--Sobic004G302100 Sobic003G217800 Sobic003G217800 Sobic001G091701--Sobic003G217800 Sobic001G091701--Sobic004G062600 Sobic005G048600 Sobic005G048600 Sobic001G091701--Sobic005G048600 Sobic003G293400 Sobic003G293400 Sobic001G091701--Sobic003G293400 Sobic009G220700 Sobic009G220700 Sobic001G091701--Sobic009G220700 Sobic003G423700 Sobic003G423700 Sobic001G091701--Sobic003G423700 Sobic010G182000 Sobic010G182000 Sobic001G091701--Sobic010G182000 Sobic007G102300 Sobic007G102300 Sobic001G091701--Sobic007G102300 Sobic001G352800 Sobic001G352800 Sobic001G091701--Sobic001G352800 Sobic010G263700 Sobic010G263700 Sobic006G254200--Sobic010G263700 Sobic006G254200--Sobic004G062600 Sobic001G218600 Sobic001G218600 Sobic006G254200--Sobic001G218600 Sobic010G263400 Sobic010G263400 Sobic006G254200--Sobic010G263400 Sobic001G506400 Sobic001G506400 Sobic006G254200--Sobic001G506400 Sobic001G034200 Sobic001G034200 Sobic006G254200--Sobic001G034200 Sobic006G254200--Sobic003G217800 Sobic003G044000 Sobic003G044000 Sobic006G254200--Sobic003G044000 Sobic003G214850 Sobic003G214850 Sobic006G254200--Sobic003G214850 Sobic003G325600--Sobic003G396500 Sobic003G325600--Sobic008G024100 Sobic003G325600--Sobic001G218600 Sobic003G325600--Sobic001G506400 Sobic001G135700 Sobic001G135700 Sobic003G325600--Sobic001G135700 Sobic007G063800 Sobic007G063800 Sobic003G325600--Sobic007G063800 Sobic008G082000 Sobic008G082000 Sobic003G325600--Sobic008G082000 Sobic003G325600--Sobic004G062600 Sobic004G033400 Sobic004G033400 Sobic003G325600--Sobic004G033400 Sobic008G024100--Sobic003G325600 Sobic005G212100 Sobic005G212100 Sobic008G024100--Sobic005G212100 Sobic008G024100--Sobic008G082000 Sobic002G061732 Sobic002G061732 Sobic008G024100--Sobic002G061732 Sobic008G024100--Sobic001G034200 Sobic008G024100--Sobic007G063800 Sobic008G024100--Sobic001G506400 Sobic005G166432 Sobic005G166432 Sobic008G024100--Sobic005G166432 Sobic004G355750 Sobic004G355750 Sobic008G024100--Sobic004G355750 Sobic004G062600--Sobic003G217800 Sobic003G200000 Sobic003G200000 Sobic004G062600--Sobic003G200000 Sobic004G062600--Sobic010G263400 Sobic004G062600--Sobic007G102300 Sobic005G045800 Sobic005G045800 Sobic004G062600--Sobic005G045800 Sobic003G258100 Sobic003G258100 Sobic004G062600--Sobic003G258100 Sobic003G352900 Sobic003G352900 Sobic004G062600--Sobic003G352900 Sobic004G062600--Sobic001G091701 Sobic002G299500 Sobic002G299500 Sobic004G062600--Sobic002G299500 Sobic009G125800 Sobic009G125800 Sobic004G117400--Sobic009G125800 Sobic009G214500 Sobic009G214500 Sobic004G117400--Sobic009G214500 Sobic009G131200 Sobic009G131200 Sobic004G117400--Sobic009G131200 Sobic005G210500 Sobic005G210500 Sobic004G117400--Sobic005G210500 Sobic002G322700 Sobic002G322700 Sobic004G117400--Sobic002G322700 Sobic010G009700 Sobic010G009700 Sobic004G117400--Sobic010G009700 Sobic010G038200 Sobic010G038200 Sobic004G117400--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic004G117400--Sobic009G136000 Sobic001G192700 Sobic001G192700 Sobic004G117400--Sobic001G192700 Sobic003G396500--Sobic001G218600 Sobic003G396500--Sobic003G325600 Sobic003G090000 Sobic003G090000 Sobic003G396500--Sobic003G090000 Sobic002G299200 Sobic002G299200 Sobic003G396500--Sobic002G299200 Sobic003G027000 Sobic003G027000 Sobic003G396500--Sobic003G027000 Sobic006G215800 Sobic006G215800 Sobic003G396500--Sobic006G215800 Sobic006G152700 Sobic006G152700 Sobic003G396500--Sobic006G152700 Sobic005G070301 Sobic005G070301 Sobic003G396500--Sobic005G070301 Sobic004G313400 Sobic004G313400 Sobic003G396500--Sobic004G313400 Sobic001G126800 Sobic001G126800 Sobic005G002800--Sobic001G126800 Sobic001G016800 Sobic001G016800 Sobic005G002800--Sobic001G016800 Sobic005G002800--Sobic001G352800 Sobic005G002800--Sobic001G192700 Sobic005G002800--Sobic001G091701 Sobic002G090500 Sobic002G090500 Sobic005G002800--Sobic002G090500 Sobic001G135200 Sobic001G135200 Sobic005G002800--Sobic001G135200 Sobic004G261800 Sobic004G261800 Sobic005G002800--Sobic004G261800 Sobic002G124900 Sobic002G124900 Sobic005G002800--Sobic002G124900 Sobic004G302100--Sobic003G396500 Sobic001G440000 Sobic001G440000 Sobic004G302100--Sobic001G440000 Sobic009G084800 Sobic009G084800 Sobic004G302100--Sobic009G084800 Sobic004G302100--Sobic006G152700 Sobic004G302100--Sobic003G325600 Sobic004G302100--Sobic001G218600 Sobic001G171001 Sobic001G171001 Sobic004G302100--Sobic001G171001 Sobic004G302100--Sobic003G044000 Sobic007G146200 Sobic007G146200 Sobic004G302100--Sobic007G146200
Octagon: transcription factors


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