Gene annotation
Transcriptome id Sobic.005G002800.1
Synonym Sb05g000400, FAD8
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
fatty acid desaturase, putative, expressed
UniProt C5Y2Y3
Pfam PF11960 PF00487
Panther DB PTHR32100 PTHR32100:SF14
NCBI CDD -
KEGG Orthology K10257; FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
Gene Ontology GO:0016717; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT5G05580 : fatty acid desaturase 8
RAP-DB (Rice) LOC_Os12g01370.1 : fatty acid desaturase, putative, expressed
MaizeGDB (Corn) Zm00025a028922
Brachypodium KQJ92651
Barley HORVU4Hr1G056470.10 , HORVU4Hr1G056470.11 , HORVU4Hr1G056470.15 , HORVU3Hr1G026670.8 , HORVU3Hr1G026670.9 , HORVU3Hr1G026670.6 , HORVU3Hr1G026670.7 , HORVU3Hr1G026670.4 , HORVU3Hr1G026670.5 , HORVU3Hr1G026670.2 , HORVU3Hr1G026670.3 , HORVU3Hr1G026670.1 , HORVU3Hr1G026670.14 , HORVU3Hr1G026670.15 , HORVU3Hr1G026670.16 , HORVU3Hr1G026670.17 , HORVU3Hr1G026670.10 , HORVU3Hr1G026670.11 , HORVU3Hr1G026670.12 , HORVU3Hr1G026670.13 , HORVU4Hr1G056470.12 , HORVU4Hr1G056470.3 , HORVU4Hr1G056470.13 , HORVU4Hr1G056470.4 , HORVU4Hr1G056470.6 , HORVU4Hr1G056470.8
Wheat TraesCS4A02G109300 , TraesCS4D02G195600
Populus -


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cDNA sequences
Sobic.005G002800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G126800 WD domain, G-beta repeat domain containing protein, expressed K11790: DTL, CDT2, denticleless
2 Sobic.001G016800 protein binding protein, putative, expressed K11271: DSCC1, sister chromatid cohesion protein DCC1
3 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
4 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
5 Sobic.001G091701 - -
6 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
7 Sobic.001G135200 OB-fold nucleic acid binding domain containing protein, putative, expressed K15365: RecQ-mediated genome instability protein 2
8 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
9 Sobic.002G124900 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
10 Sobic.003G134500 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
11 Sobic.001G346500 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
12 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
13 Sobic.001G219800 methyltransferase, putative, expressed -
14 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
15 Sobic.003G325600 expressed protein -
16 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
17 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
18 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
19 Sobic.002G297500 coiled-coil domain-containing protein 111, putative, expressed -
20 Sobic.008G071050 - K12589: RRP42, exosome complex component RRP42


Gene co-expression network
sample Sobic005G002800 Sobic005G002800 Sobic001G126800 Sobic001G126800 Sobic005G002800--Sobic001G126800 Sobic001G016800 Sobic001G016800 Sobic005G002800--Sobic001G016800 Sobic001G352800 Sobic001G352800 Sobic005G002800--Sobic001G352800 Sobic001G192700 Sobic001G192700 Sobic005G002800--Sobic001G192700 Sobic001G091701 Sobic001G091701 Sobic005G002800--Sobic001G091701 Sobic002G090500 Sobic002G090500 Sobic005G002800--Sobic002G090500 Sobic001G135200 Sobic001G135200 Sobic005G002800--Sobic001G135200 Sobic004G261800 Sobic004G261800 Sobic005G002800--Sobic004G261800 Sobic002G124900 Sobic002G124900 Sobic005G002800--Sobic002G124900 Sobic003G423700 Sobic003G423700 Sobic001G126800--Sobic003G423700 Sobic004G241300 Sobic004G241300 Sobic001G126800--Sobic004G241300 Sobic008G104000 Sobic008G104000 Sobic001G126800--Sobic008G104000 Sobic002G420100 Sobic002G420100 Sobic001G126800--Sobic002G420100 Sobic001G248400 Sobic001G248400 Sobic001G126800--Sobic001G248400 Sobic010G182000 Sobic010G182000 Sobic001G126800--Sobic010G182000 Sobic002G186200 Sobic002G186200 Sobic001G126800--Sobic002G186200 Sobic009G214500 Sobic009G214500 Sobic001G126800--Sobic009G214500 Sobic010G253200 Sobic010G253200 Sobic001G126800--Sobic010G253200 Sobic002G297500 Sobic002G297500 Sobic001G016800--Sobic002G297500 Sobic006G119300 Sobic006G119300 Sobic001G016800--Sobic006G119300 Sobic010G051100 Sobic010G051100 Sobic001G016800--Sobic010G051100 Sobic002G113400 Sobic002G113400 Sobic001G016800--Sobic002G113400 Sobic009G181500 Sobic009G181500 Sobic001G016800--Sobic009G181500 Sobic003G444200 Sobic003G444200 Sobic001G016800--Sobic003G444200 Sobic001G082800 Sobic001G082800 Sobic001G016800--Sobic001G082800 Sobic004G053900 Sobic004G053900 Sobic001G016800--Sobic004G053900 Sobic004G032900 Sobic004G032900 Sobic001G016800--Sobic004G032900 Sobic001G219800 Sobic001G219800 Sobic001G352800--Sobic001G219800 Sobic002G232400 Sobic002G232400 Sobic001G352800--Sobic002G232400 Sobic002G255400 Sobic002G255400 Sobic001G352800--Sobic002G255400 Sobic003G260600 Sobic003G260600 Sobic001G352800--Sobic003G260600 Sobic003G075200 Sobic003G075200 Sobic001G352800--Sobic003G075200 Sobic003G085500 Sobic003G085500 Sobic001G352800--Sobic003G085500 Sobic001G352800--Sobic002G090500 Sobic001G352800--Sobic001G192700 Sobic001G352800--Sobic001G126800 Sobic001G192700--Sobic001G219800 Sobic003G016300 Sobic003G016300 Sobic001G192700--Sobic003G016300 Sobic001G192700--Sobic001G352800 Sobic001G192700--Sobic002G232400 Sobic001G192700--Sobic001G135200 Sobic001G348000 Sobic001G348000 Sobic001G192700--Sobic001G348000 Sobic004G117400 Sobic004G117400 Sobic001G192700--Sobic004G117400 Sobic001G192700--Sobic001G091701 Sobic002G387800 Sobic002G387800 Sobic001G192700--Sobic002G387800 Sobic003G217800 Sobic003G217800 Sobic001G091701--Sobic003G217800 Sobic004G062600 Sobic004G062600 Sobic001G091701--Sobic004G062600 Sobic005G048600 Sobic005G048600 Sobic001G091701--Sobic005G048600 Sobic003G293400 Sobic003G293400 Sobic001G091701--Sobic003G293400 Sobic009G220700 Sobic009G220700 Sobic001G091701--Sobic009G220700 Sobic001G091701--Sobic003G423700 Sobic001G091701--Sobic010G182000 Sobic007G102300 Sobic007G102300 Sobic001G091701--Sobic007G102300 Sobic001G091701--Sobic001G352800 Sobic002G153000 Sobic002G153000 Sobic002G090500--Sobic002G153000 Sobic002G090500--Sobic002G232400 Sobic002G090500--Sobic001G352800 Sobic004G356300 Sobic004G356300 Sobic002G090500--Sobic004G356300 Sobic002G090500--Sobic003G075200 Sobic004G218600 Sobic004G218600 Sobic002G090500--Sobic004G218600 Sobic001G011000 Sobic001G011000 Sobic002G090500--Sobic001G011000 Sobic001G543400 Sobic001G543400 Sobic002G090500--Sobic001G543400 Sobic008G057900 Sobic008G057900 Sobic002G090500--Sobic008G057900 Sobic003G044700 Sobic003G044700 Sobic001G135200--Sobic003G044700 Sobic001G135200--Sobic001G192700 Sobic001G135200--Sobic003G016300 Sobic001G135200--Sobic004G261800 Sobic002G352200 Sobic002G352200 Sobic001G135200--Sobic002G352200 Sobic004G100100 Sobic004G100100 Sobic001G135200--Sobic004G100100 Sobic009G244900 Sobic009G244900 Sobic001G135200--Sobic009G244900 Sobic005G185200 Sobic005G185200 Sobic001G135200--Sobic005G185200 Sobic006G271000 Sobic006G271000 Sobic001G135200--Sobic006G271000 Sobic003G013700 Sobic003G013700 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic004G261800--Sobic008G156600 Sobic002G124900--Sobic002G352200 Sobic002G124900--Sobic004G261800 Sobic010G231700 Sobic010G231700 Sobic002G124900--Sobic010G231700 Sobic002G420600 Sobic002G420600 Sobic002G124900--Sobic002G420600 Sobic002G124900--Sobic003G013700 Sobic002G124900--Sobic001G303900 Sobic004G173700 Sobic004G173700 Sobic002G124900--Sobic004G173700 Sobic002G124900--Sobic007G014700 Sobic004G247500 Sobic004G247500 Sobic002G124900--Sobic004G247500
Octagon: transcription factors


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