Gene annotation
Transcriptome id Sobic.008G093900.1
Synonym Sb08g013610, ARFA1F, ATARFA1F
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5YNK9
Pfam PF00025
Panther DB PTHR11711 PTHR11711:SF205
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G10630 : ADP-ribosylation factor A1F
RAP-DB (Rice) LOC_Os01g59790.2 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a045417 , Zm00025a027123 , Zm00025a039804 , Zm00025a044059 , Zm00025a016469 , Zm00025a035278
Brachypodium KQK12518 , KQJ92478 , KQK20331 , KQK20330 , KQK20333 , KQK20332 , KQK20335 , PNT73921 , KQK10268 , KQK10269 , PNT73073
Barley HORVU5Hr1G111500.3 , HORVU5Hr1G111500.2 , HORVU5Hr1G111500.1 , HORVU5Hr1G111500.5 , HORVU5Hr1G111500.4 , HORVU3Hr1G079700.2 , HORVU3Hr1G079700.1 , HORVU3Hr1G079700.6 , HORVU3Hr1G079700.4 , HORVU3Hr1G079700.5 , HORVU3Hr1G079700.8 , HORVU5Hr1G045440.4 , HORVU5Hr1G045440.5 , HORVU5Hr1G045440.6 , HORVU5Hr1G045440.1 , HORVU5Hr1G045440.2 , HORVU5Hr1G045440.3 , HORVU0Hr1G027130.5 , HORVU0Hr1G027130.4 , HORVU0Hr1G027130.6 , HORVU0Hr1G027130.1 , HORVU0Hr1G027130.3 , HORVU0Hr1G027130.2 , HORVU1Hr1G068790.2 , HORVU1Hr1G068790.1 , HORVU1Hr1G068790.3 , HORVU1Hr1G068790.5 , HORVU1Hr1G068790.4 , HORVU1Hr1G068790.7 , HORVU1Hr1G068790.6
Wheat TraesCS2D02G244900 , TraesCS3A02G337300 , TraesCS3A02G337300 , TraesCS1B02G317000 , TraesCS3D02G330500 , TraesCS3D02G330500 , TraesCS5A02G467400 , TraesCS1A02G306200 , TraesCS5A02G142100 , TraesCS5B02G140900 , TraesCS5D02G150000 , TraesCS5D02G150000 , TraesCS2A02G235500 , TraesCS5D02G480200 , TraesCS5B02G479100 , TraesCS1D02G305900 , TraesCS3B02G368600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G217600 PHD-finger domain containing protein, putative, expressed -
2 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
3 Sobic.002G031900 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed -
4 Sobic.004G253700 - -
5 Sobic.005G133600 - -
6 Sobic.005G095000 -(PubMedID : 22050783)@-(PubMedID : 25928459)@disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
7 Sobic.009G248801 - -
8 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
9 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
10 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
11 Sobic.003G021100 expressed protein -
12 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
13 Sobic.003G416000 - -
14 Sobic.004G069000 expressed protein -
15 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
16 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G333800 MYB family transcription factor, putative, expressed -
18 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G240400 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic008G093900 Sobic008G093900 Sobic010G217600 Sobic010G217600 Sobic008G093900--Sobic010G217600 Sobic002G244200 Sobic002G244200 Sobic008G093900--Sobic002G244200 Sobic002G031900 Sobic002G031900 Sobic008G093900--Sobic002G031900 Sobic004G253700 Sobic004G253700 Sobic008G093900--Sobic004G253700 Sobic005G133600 Sobic005G133600 Sobic008G093900--Sobic005G133600 Sobic005G095000 Sobic005G095000 Sobic008G093900--Sobic005G095000 Sobic009G248801 Sobic009G248801 Sobic008G093900--Sobic009G248801 Sobic010G275700 Sobic010G275700 Sobic008G093900--Sobic010G275700 Sobic008G038500 Sobic008G038500 Sobic008G093900--Sobic008G038500 Sobic010G019000 Sobic010G019000 Sobic010G217600--Sobic010G019000 Sobic004G334300 Sobic004G334300 Sobic010G217600--Sobic004G334300 Sobic001G303100 Sobic001G303100 Sobic010G217600--Sobic001G303100 Sobic001G381600 Sobic001G381600 Sobic010G217600--Sobic001G381600 Sobic001G066500 Sobic001G066500 Sobic010G217600--Sobic001G066500 Sobic002G305000 Sobic002G305000 Sobic010G217600--Sobic002G305000 Sobic009G255700 Sobic009G255700 Sobic010G217600--Sobic009G255700 Sobic010G227800 Sobic010G227800 Sobic010G217600--Sobic010G227800 Sobic004G244900 Sobic004G244900 Sobic010G217600--Sobic004G244900 Sobic002G244200--Sobic009G248801 Sobic002G244200--Sobic005G095000 Sobic008G166550 Sobic008G166550 Sobic002G244200--Sobic008G166550 Sobic007G090403 Sobic007G090403 Sobic002G244200--Sobic007G090403 Sobic007G133000 Sobic007G133000 Sobic002G244200--Sobic007G133000 Sobic003G160100 Sobic003G160100 Sobic002G244200--Sobic003G160100 Sobic004G086150 Sobic004G086150 Sobic002G244200--Sobic004G086150 Sobic007G202300 Sobic007G202300 Sobic002G244200--Sobic007G202300 Sobic003G416000 Sobic003G416000 Sobic002G244200--Sobic003G416000 Sobic005G145550 Sobic005G145550 Sobic002G031900--Sobic005G145550 Sobic004G324700 Sobic004G324700 Sobic002G031900--Sobic004G324700 Sobic007G163001 Sobic007G163001 Sobic002G031900--Sobic007G163001 Sobic010G186100 Sobic010G186100 Sobic002G031900--Sobic010G186100 Sobic008G111200 Sobic008G111200 Sobic002G031900--Sobic008G111200 Sobic001G475100 Sobic001G475100 Sobic002G031900--Sobic001G475100 Sobic003G207500 Sobic003G207500 Sobic002G031900--Sobic003G207500 Sobic008G021400 Sobic008G021400 Sobic002G031900--Sobic008G021400 Sobic010G214500 Sobic010G214500 Sobic002G031900--Sobic010G214500 Sobic008G101100 Sobic008G101100 Sobic004G253700--Sobic008G101100 Sobic005G089400 Sobic005G089400 Sobic004G253700--Sobic005G089400 Sobic008G122100 Sobic008G122100 Sobic004G253700--Sobic008G122100 Sobic004G253700--Sobic005G133600 Sobic007G010700 Sobic007G010700 Sobic004G253700--Sobic007G010700 Sobic001G000501 Sobic001G000501 Sobic004G253700--Sobic001G000501 Sobic004G253700--Sobic009G248801 Sobic004G253700--Sobic003G416000 Sobic008G105366 Sobic008G105366 Sobic004G253700--Sobic008G105366 Sobic001G223550 Sobic001G223550 Sobic005G133600--Sobic001G223550 Sobic005G133600--Sobic009G248801 Sobic005G133600--Sobic008G101100 Sobic005G133600--Sobic004G253700 Sobic005G133600--Sobic003G160100 Sobic007G185300 Sobic007G185300 Sobic005G133600--Sobic007G185300 Sobic005G133600--Sobic007G090403 Sobic005G133600--Sobic007G010700 Sobic005G133600--Sobic005G095000 Sobic009G194500 Sobic009G194500 Sobic005G095000--Sobic009G194500 Sobic010G131700 Sobic010G131700 Sobic005G095000--Sobic010G131700 Sobic005G095000--Sobic003G160100 Sobic002G119100 Sobic002G119100 Sobic005G095000--Sobic002G119100 Sobic006G235300 Sobic006G235300 Sobic005G095000--Sobic006G235300 Sobic005G095000--Sobic002G244200 Sobic004G127800 Sobic004G127800 Sobic005G095000--Sobic004G127800 Sobic009G100700 Sobic009G100700 Sobic005G095000--Sobic009G100700 Sobic005G095000--Sobic004G086150 Sobic009G248801--Sobic004G086150 Sobic009G248801--Sobic002G244200 Sobic009G248801--Sobic003G160100 Sobic009G248801--Sobic005G095000 Sobic009G248801--Sobic007G202300 Sobic009G248801--Sobic005G133600 Sobic009G248801--Sobic008G101100 Sobic009G248801--Sobic007G090403 Sobic009G248801--Sobic008G166550 Sobic003G021100 Sobic003G021100 Sobic010G275700--Sobic003G021100 Sobic005G101200 Sobic005G101200 Sobic010G275700--Sobic005G101200 Sobic004G281800 Sobic004G281800 Sobic010G275700--Sobic004G281800 Sobic001G352400 Sobic001G352400 Sobic010G275700--Sobic001G352400 Sobic004G189800 Sobic004G189800 Sobic010G275700--Sobic004G189800 Sobic002G382700 Sobic002G382700 Sobic010G275700--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic010G275700--Sobic001G333800 Sobic010G275700--Sobic002G119100 Sobic009G038900 Sobic009G038900 Sobic010G275700--Sobic009G038900 Sobic004G312600 Sobic004G312600 Sobic008G038500--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic008G038500--Sobic007G227100 Sobic008G038500--Sobic009G194500 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic007G058100 Sobic007G058100 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700
Octagon: transcription factors


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