Gene annotation
Transcriptome id Sobic.008G106900.1
Synonym Sb08g016180
Functional annotation cornichon protein, putative, expressed
UniProt C5YP11
Pfam PF03311
Panther DB PTHR12290
NCBI CDD KOG2729; ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G12180 : Cornichon family protein
RAP-DB (Rice) LOC_Os12g32180.1 : cornichon protein, putative, expressed
MaizeGDB (Corn) Zm00025a025584 , Zm00025a040589
Brachypodium KQJ86622 , KQJ86623
Barley -
Wheat TraesCS5D02G116400 , TraesCS5B02G108800 , TraesCS5D02G116400 , TraesCS5A02G104500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G106900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G069200 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.010G144400 glycosyltransferase, putative, expressed -
4 Sobic.009G040900 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
5 Sobic.002G278300 thaumatin, putative, expressed -
6 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
8 Sobic.001G090000 expressed protein -
9 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
10 Sobic.002G282400 expressed protein -
11 Sobic.001G201100 cytochrome b561, putative, expressed K08360: cytochrome b-561
12 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
13 Sobic.003G368700 COV1, putative, expressed -
14 Sobic.002G050200 expressed protein -
15 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -
16 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
17 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
18 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
19 Sobic.002G261800 snRK1-interacting protein 1, putative, expressed -
20 Sobic.003G436800 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic008G106900 Sobic008G106900 Sobic004G069200 Sobic004G069200 Sobic008G106900--Sobic004G069200 Sobic002G258100 Sobic002G258100 Sobic008G106900--Sobic002G258100 Sobic010G144400 Sobic010G144400 Sobic008G106900--Sobic010G144400 Sobic009G040900 Sobic009G040900 Sobic008G106900--Sobic009G040900 Sobic002G278300 Sobic002G278300 Sobic008G106900--Sobic002G278300 Sobic002G068300 Sobic002G068300 Sobic008G106900--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic008G106900--Sobic001G056700 Sobic001G090000 Sobic001G090000 Sobic008G106900--Sobic001G090000 Sobic004G166500 Sobic004G166500 Sobic008G106900--Sobic004G166500 Sobic001G247600 Sobic001G247600 Sobic004G069200--Sobic001G247600 Sobic003G379800 Sobic003G379800 Sobic004G069200--Sobic003G379800 Sobic006G059700 Sobic006G059700 Sobic004G069200--Sobic006G059700 Sobic004G225900 Sobic004G225900 Sobic004G069200--Sobic004G225900 Sobic001G070800 Sobic001G070800 Sobic004G069200--Sobic001G070800 Sobic006G136800 Sobic006G136800 Sobic004G069200--Sobic006G136800 Sobic002G312900 Sobic002G312900 Sobic004G069200--Sobic002G312900 Sobic001G009500 Sobic001G009500 Sobic004G069200--Sobic001G009500 Sobic010G185000 Sobic010G185000 Sobic004G069200--Sobic010G185000 Sobic002G175500 Sobic002G175500 Sobic002G258100--Sobic002G175500 Sobic008G107500 Sobic008G107500 Sobic002G258100--Sobic008G107500 Sobic002G258100--Sobic010G144400 Sobic001G010400 Sobic001G010400 Sobic002G258100--Sobic001G010400 Sobic001G023200 Sobic001G023200 Sobic002G258100--Sobic001G023200 Sobic001G253600 Sobic001G253600 Sobic002G258100--Sobic001G253600 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic001G393800 Sobic001G393800 Sobic002G258100--Sobic001G393800 Sobic010G144400--Sobic002G068300 Sobic010G144400--Sobic001G056700 Sobic010G228600 Sobic010G228600 Sobic010G144400--Sobic010G228600 Sobic010G144400--Sobic004G172700 Sobic010G144400--Sobic001G090000 Sobic009G016201 Sobic009G016201 Sobic010G144400--Sobic009G016201 Sobic010G144400--Sobic002G258100 Sobic001G471900 Sobic001G471900 Sobic010G144400--Sobic001G471900 Sobic010G144400--Sobic001G253600 Sobic009G040900--Sobic002G278300 Sobic009G040900--Sobic004G069200 Sobic003G436800 Sobic003G436800 Sobic009G040900--Sobic003G436800 Sobic009G055100 Sobic009G055100 Sobic009G040900--Sobic009G055100 Sobic009G040900--Sobic006G059700 Sobic009G040900--Sobic008G106900 Sobic009G155050 Sobic009G155050 Sobic009G040900--Sobic009G155050 Sobic009G166700 Sobic009G166700 Sobic009G040900--Sobic009G166700 Sobic010G209900 Sobic010G209900 Sobic009G040900--Sobic010G209900 Sobic002G278300--Sobic003G436800 Sobic002G278300--Sobic009G055100 Sobic002G278300--Sobic009G040900 Sobic009G159200 Sobic009G159200 Sobic002G278300--Sobic009G159200 Sobic002G278300--Sobic001G056700 Sobic002G278300--Sobic009G166700 Sobic007G177100 Sobic007G177100 Sobic002G278300--Sobic007G177100 Sobic002G278300--Sobic004G069200 Sobic009G075900 Sobic009G075900 Sobic002G278300--Sobic009G075900 Sobic009G036900 Sobic009G036900 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic002G068300--Sobic009G016201 Sobic006G256500 Sobic006G256500 Sobic002G068300--Sobic006G256500 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic001G056700--Sobic001G471900 Sobic002G291300 Sobic002G291300 Sobic001G056700--Sobic002G291300 Sobic001G056700--Sobic010G228600 Sobic001G056700--Sobic010G144400 Sobic004G164500 Sobic004G164500 Sobic001G056700--Sobic004G164500 Sobic001G082400 Sobic001G082400 Sobic001G056700--Sobic001G082400 Sobic001G371300 Sobic001G371300 Sobic001G056700--Sobic001G371300 Sobic003G273100 Sobic003G273100 Sobic001G056700--Sobic003G273100 Sobic001G056700--Sobic002G278300 Sobic001G090000--Sobic010G144400 Sobic001G090000--Sobic009G016201 Sobic008G132800 Sobic008G132800 Sobic001G090000--Sobic008G132800 Sobic001G090000--Sobic002G068300 Sobic001G090000--Sobic004G172700 Sobic010G029400 Sobic010G029400 Sobic001G090000--Sobic010G029400 Sobic006G150600 Sobic006G150600 Sobic001G090000--Sobic006G150600 Sobic001G282100 Sobic001G282100 Sobic001G090000--Sobic001G282100 Sobic010G008100 Sobic010G008100 Sobic001G090000--Sobic010G008100 Sobic003G358300 Sobic003G358300 Sobic004G166500--Sobic003G358300 Sobic001G201100 Sobic001G201100 Sobic004G166500--Sobic001G201100 Sobic001G066700 Sobic001G066700 Sobic004G166500--Sobic001G066700 Sobic003G368700 Sobic003G368700 Sobic004G166500--Sobic003G368700 Sobic008G130400 Sobic008G130400 Sobic004G166500--Sobic008G130400 Sobic002G218000 Sobic002G218000 Sobic004G166500--Sobic002G218000 Sobic006G239300 Sobic006G239300 Sobic004G166500--Sobic006G239300 Sobic001G505500 Sobic001G505500 Sobic004G166500--Sobic001G505500 Sobic009G070200 Sobic009G070200 Sobic004G166500--Sobic009G070200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.