Gene annotation
Transcriptome id Sobic.008G175200.1
Synonym Sb08g021970
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
RING-H2 finger protein ATL5D, putative, expressed
UniProt C5YSE7
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G06490 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g11520.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a025140
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G240800 - -
2 Sobic.006G151001 - -
3 Sobic.003G002501 - -
4 Sobic.007G034600 U box protein 8, putative, expressed -
5 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
6 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
7 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
8 Sobic.004G015400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
9 Sobic.003G331700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thaumatin, putative, expressed -
10 Sobic.003G390900 lipase, putative, expressed -
11 Sobic.003G316350 - -
12 Sobic.009G041200 expressed protein -
13 Sobic.002G274100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G244500 nuclease PA3, putative, expressed -
15 Sobic.003G067700 expressed protein -
16 Sobic.006G133000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
17 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
18 Sobic.009G041100 expressed protein -
19 Sobic.010G133700 - -
20 Sobic.003G000500 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic008G175200 Sobic008G175200 Sobic002G240800 Sobic002G240800 Sobic008G175200--Sobic002G240800 Sobic006G151001 Sobic006G151001 Sobic008G175200--Sobic006G151001 Sobic003G002501 Sobic003G002501 Sobic008G175200--Sobic003G002501 Sobic007G034600 Sobic007G034600 Sobic008G175200--Sobic007G034600 Sobic009G149800 Sobic009G149800 Sobic008G175200--Sobic009G149800 Sobic003G421900 Sobic003G421900 Sobic008G175200--Sobic003G421900 Sobic001G488200 Sobic001G488200 Sobic008G175200--Sobic001G488200 Sobic004G015400 Sobic004G015400 Sobic008G175200--Sobic004G015400 Sobic003G331700 Sobic003G331700 Sobic008G175200--Sobic003G331700 Sobic002G240800--Sobic003G421900 Sobic004G067900 Sobic004G067900 Sobic002G240800--Sobic004G067900 Sobic003G062200 Sobic003G062200 Sobic002G240800--Sobic003G062200 Sobic001G368900 Sobic001G368900 Sobic002G240800--Sobic001G368900 Sobic006G244500 Sobic006G244500 Sobic002G240800--Sobic006G244500 Sobic006G133000 Sobic006G133000 Sobic002G240800--Sobic006G133000 Sobic006G096200 Sobic006G096200 Sobic002G240800--Sobic006G096200 Sobic007G182500 Sobic007G182500 Sobic002G240800--Sobic007G182500 Sobic002G240800--Sobic006G151001 Sobic009G041100 Sobic009G041100 Sobic006G151001--Sobic009G041100 Sobic003G376000 Sobic003G376000 Sobic006G151001--Sobic003G376000 Sobic008G037000 Sobic008G037000 Sobic006G151001--Sobic008G037000 Sobic006G151001--Sobic003G062200 Sobic006G151001--Sobic006G096200 Sobic009G169650 Sobic009G169650 Sobic006G151001--Sobic009G169650 Sobic006G151001--Sobic006G244500 Sobic009G009800 Sobic009G009800 Sobic006G151001--Sobic009G009800 Sobic010G044600 Sobic010G044600 Sobic006G151001--Sobic010G044600 Sobic002G044100 Sobic002G044100 Sobic003G002501--Sobic002G044100 Sobic006G221700 Sobic006G221700 Sobic003G002501--Sobic006G221700 Sobic003G316350 Sobic003G316350 Sobic003G002501--Sobic003G316350 Sobic002G046600 Sobic002G046600 Sobic003G002501--Sobic002G046600 Sobic003G067700 Sobic003G067700 Sobic003G002501--Sobic003G067700 Sobic002G260800 Sobic002G260800 Sobic003G002501--Sobic002G260800 Sobic003G002501--Sobic007G034600 Sobic003G002501--Sobic003G062200 Sobic003G002501--Sobic006G151001 Sobic007G034600--Sobic004G067900 Sobic006G096300 Sobic006G096300 Sobic007G034600--Sobic006G096300 Sobic004G028800 Sobic004G028800 Sobic007G034600--Sobic004G028800 Sobic002G308400 Sobic002G308400 Sobic007G034600--Sobic002G308400 Sobic007G034600--Sobic009G149800 Sobic007G034600--Sobic002G240800 Sobic001G106400 Sobic001G106400 Sobic007G034600--Sobic001G106400 Sobic007G034600--Sobic003G067700 Sobic009G170800 Sobic009G170800 Sobic007G034600--Sobic009G170800 Sobic003G024500 Sobic003G024500 Sobic009G149800--Sobic003G024500 Sobic001G148700 Sobic001G148700 Sobic009G149800--Sobic001G148700 Sobic002G378401 Sobic002G378401 Sobic009G149800--Sobic002G378401 Sobic003G403400 Sobic003G403400 Sobic009G149800--Sobic003G403400 Sobic010G217900 Sobic010G217900 Sobic009G149800--Sobic010G217900 Sobic003G063200 Sobic003G063200 Sobic009G149800--Sobic003G063200 Sobic009G149800--Sobic004G015400 Sobic008G111500 Sobic008G111500 Sobic009G149800--Sobic008G111500 Sobic004G063500 Sobic004G063500 Sobic009G149800--Sobic004G063500 Sobic003G421900--Sobic009G009800 Sobic003G421900--Sobic006G244500 Sobic003G421900--Sobic006G096200 Sobic010G136300 Sobic010G136300 Sobic003G421900--Sobic010G136300 Sobic003G421900--Sobic001G368900 Sobic003G421900--Sobic008G037000 Sobic001G277800 Sobic001G277800 Sobic003G421900--Sobic001G277800 Sobic010G031600 Sobic010G031600 Sobic003G421900--Sobic010G031600 Sobic003G421900--Sobic003G376000 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic005G158901 Sobic005G158901 Sobic001G488200--Sobic005G158901 Sobic001G488200--Sobic003G421900 Sobic006G066600 Sobic006G066600 Sobic001G488200--Sobic006G066600 Sobic004G015400--Sobic009G149800 Sobic004G015400--Sobic006G244500 Sobic004G015400--Sobic004G028800 Sobic004G015400--Sobic003G316350 Sobic004G015400--Sobic001G488200 Sobic009G100300 Sobic009G100300 Sobic004G015400--Sobic009G100300 Sobic004G015400--Sobic006G151001 Sobic008G051400 Sobic008G051400 Sobic004G015400--Sobic008G051400 Sobic007G181600 Sobic007G181600 Sobic004G015400--Sobic007G181600 Sobic004G270350 Sobic004G270350 Sobic003G331700--Sobic004G270350 Sobic006G132300 Sobic006G132300 Sobic003G331700--Sobic006G132300 Sobic003G242200 Sobic003G242200 Sobic003G331700--Sobic003G242200 Sobic005G087666 Sobic005G087666 Sobic003G331700--Sobic005G087666 Sobic007G036600 Sobic007G036600 Sobic003G331700--Sobic007G036600 Sobic002G362400 Sobic002G362400 Sobic003G331700--Sobic002G362400 Sobic003G331700--Sobic010G044600 Sobic010G237100 Sobic010G237100 Sobic003G331700--Sobic010G237100 Sobic007G029800 Sobic007G029800 Sobic003G331700--Sobic007G029800
Octagon: transcription factors


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