Gene annotation
Transcriptome id Sobic.009G076200.1
Synonym Sb09g006400
Functional annotation NLI interacting factor(NIF) family protein (PubMedID : 26320239)
NLI interacting factor-like phosphatase, putative, expressed
UniProt C5YUM5
Pfam PF03031
Panther DB PTHR12210
NCBI CDD -
KEGG Orthology K15731; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45700 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os05g11570.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a040058 , Zm00025a044177 , Zm00025a037110
Brachypodium KQK07071
Barley HORVU6Hr1G022070.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
2 Sobic.006G116500 expressed protein -
3 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
4 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
5 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
6 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
7 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
8 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
9 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
10 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
12 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
13 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
14 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
15 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
16 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
17 Sobic.003G055600 expressed protein -
18 Sobic.003G387700 expressed protein -
19 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
20 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -


Gene co-expression network
sample Sobic009G076200 Sobic009G076200 Sobic004G331600 Sobic004G331600 Sobic009G076200--Sobic004G331600 Sobic006G116500 Sobic006G116500 Sobic009G076200--Sobic006G116500 Sobic008G129200 Sobic008G129200 Sobic009G076200--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic009G076200--Sobic005G144600 Sobic010G147700 Sobic010G147700 Sobic009G076200--Sobic010G147700 Sobic005G110535 Sobic005G110535 Sobic009G076200--Sobic005G110535 Sobic002G223900 Sobic002G223900 Sobic009G076200--Sobic002G223900 Sobic003G179500 Sobic003G179500 Sobic009G076200--Sobic003G179500 Sobic003G183700 Sobic003G183700 Sobic009G076200--Sobic003G183700 Sobic001G456500 Sobic001G456500 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic009G087000 Sobic009G087000 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic006G116500--Sobic001G456500 Sobic004G355500 Sobic004G355500 Sobic006G116500--Sobic004G355500 Sobic001G169800 Sobic001G169800 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic007G168900 Sobic007G168900 Sobic005G144600--Sobic007G168900 Sobic010G105400 Sobic010G105400 Sobic005G144600--Sobic010G105400 Sobic003G294500 Sobic003G294500 Sobic005G144600--Sobic003G294500 Sobic005G000500 Sobic005G000500 Sobic005G144600--Sobic005G000500 Sobic003G314900 Sobic003G314900 Sobic005G144600--Sobic003G314900 Sobic001G177900 Sobic001G177900 Sobic005G144600--Sobic001G177900 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic005G144600--Sobic003G179500 Sobic006G029300 Sobic006G029300 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic003G369200 Sobic003G369200 Sobic010G147700--Sobic003G369200 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic002G223900--Sobic001G456500 Sobic002G223900--Sobic001G083300 Sobic001G105800 Sobic001G105800 Sobic002G223900--Sobic001G105800 Sobic002G223900--Sobic004G331600 Sobic002G223900--Sobic007G007800 Sobic002G223900--Sobic008G129200 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic003G179500--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic003G179500--Sobic010G103700 Sobic003G179500--Sobic010G105400 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic003G179500--Sobic004G047100 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700
Octagon: transcription factors


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