Gene annotation
Transcriptome id Sobic.009G109700.1
Synonym Sb09g017821
Functional annotation similar to Putative uncharacterized protein (PubMedID : 29862293)
protein phosphatase 2C, putative, expressed
UniProt C5YWS1
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF198
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT5G27930 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os05g29030.2 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a026231 , Zm00025a003450 , Zm00025a046885 , Zm00025a050475 , Zm00025a004670 , Zm00025a038260 , Zm00025a006597 , Zm00025a043382 , Zm00025a039869 , Zm00025a001957
Brachypodium KQK06714 , KQK06713
Barley HORVU1Hr1G059140.4 , HORVU1Hr1G059140.5 , HORVU1Hr1G059140.6 , HORVU1Hr1G059140.1 , HORVU1Hr1G059140.2 , HORVU1Hr1G059140.3 , HORVU1Hr1G059130.5 , HORVU1Hr1G059130.4 , HORVU1Hr1G059130.6 , HORVU1Hr1G059130.1 , HORVU1Hr1G059130.3 , HORVU1Hr1G059130.2 , HORVU1Hr1G059090.7 , HORVU1Hr1G059090.4 , HORVU1Hr1G059090.5 , HORVU1Hr1G059090.2 , HORVU1Hr1G059090.3 , HORVU1Hr1G059090.1 , HORVU2Hr1G039710.4 , HORVU2Hr1G039710.5 , HORVU2Hr1G039710.1 , HORVU2Hr1G039710.2 , HORVU2Hr1G039710.3
Wheat TraesCS1B02G242200 , TraesCS1D02G229700 , TraesCS1D02G229700 , TraesCS2D02G214200 , TraesCS1A02G228000 , TraesCS2B02G229000 , TraesCS1B02G033400 , TraesCS1D02G229600 , TraesCS1D02G229600 , TraesCS1B02G242400 , TraesCS2A02G201900 , TraesCS7B02G361000 , TraesCS1B02G242300 , TraesCS1A02G228200 , TraesCS1A02G228200 , TraesCS1D02G230000 , TraesCS1D02G230000 , TraesCS1A02G228100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G109700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165800 Protein kinase domain containing protein, expressed -
2 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.004G305300 - -
4 Sobic.002G399000 expressed protein -
5 Sobic.002G085600 - -
6 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.009G192933 - -
8 Sobic.003G050800 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed K15283: solute carrier family 35, member E1
9 Sobic.006G170800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
10 Sobic.007G174200 carrier, putative, expressed -
11 Sobic.002G196900 expressed protein -
12 Sobic.007G077466 - -
13 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
14 Sobic.001G019601 - -
15 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
16 Sobic.009G181900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
17 Sobic.002G197400 expressed protein -
18 Sobic.005G025400 CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.004G144300 - -
20 Sobic.009G223900 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G109700 Sobic009G109700 Sobic008G165800 Sobic008G165800 Sobic009G109700--Sobic008G165800 Sobic001G350300 Sobic001G350300 Sobic009G109700--Sobic001G350300 Sobic004G305300 Sobic004G305300 Sobic009G109700--Sobic004G305300 Sobic002G399000 Sobic002G399000 Sobic009G109700--Sobic002G399000 Sobic002G085600 Sobic002G085600 Sobic009G109700--Sobic002G085600 Sobic003G118500 Sobic003G118500 Sobic009G109700--Sobic003G118500 Sobic009G192933 Sobic009G192933 Sobic009G109700--Sobic009G192933 Sobic003G050800 Sobic003G050800 Sobic009G109700--Sobic003G050800 Sobic006G170800 Sobic006G170800 Sobic009G109700--Sobic006G170800 Sobic002G196900 Sobic002G196900 Sobic008G165800--Sobic002G196900 Sobic010G131950 Sobic010G131950 Sobic008G165800--Sobic010G131950 Sobic005G031100 Sobic005G031100 Sobic008G165800--Sobic005G031100 Sobic002G336500 Sobic002G336500 Sobic008G165800--Sobic002G336500 Sobic008G165800--Sobic009G109700 Sobic009G035100 Sobic009G035100 Sobic008G165800--Sobic009G035100 Sobic007G219000 Sobic007G219000 Sobic008G165800--Sobic007G219000 Sobic003G040300 Sobic003G040300 Sobic008G165800--Sobic003G040300 Sobic009G208000 Sobic009G208000 Sobic008G165800--Sobic009G208000 Sobic001G350300--Sobic006G170800 Sobic001G350300--Sobic004G305300 Sobic001G350300--Sobic002G399000 Sobic004G350600 Sobic004G350600 Sobic001G350300--Sobic004G350600 Sobic001G191300 Sobic001G191300 Sobic001G350300--Sobic001G191300 Sobic001G104100 Sobic001G104100 Sobic001G350300--Sobic001G104100 Sobic002G320700 Sobic002G320700 Sobic001G350300--Sobic002G320700 Sobic001G350300--Sobic003G118500 Sobic001G113400 Sobic001G113400 Sobic001G350300--Sobic001G113400 Sobic004G305300--Sobic001G350300 Sobic004G305300--Sobic006G170800 Sobic004G305300--Sobic003G118500 Sobic004G305300--Sobic001G191300 Sobic004G305300--Sobic001G104100 Sobic004G305300--Sobic002G085600 Sobic004G305300--Sobic004G350600 Sobic004G305300--Sobic002G399000 Sobic007G077466 Sobic007G077466 Sobic004G305300--Sobic007G077466 Sobic002G399000--Sobic001G350300 Sobic002G399000--Sobic004G350600 Sobic002G399000--Sobic001G104100 Sobic002G399000--Sobic001G191300 Sobic002G399000--Sobic006G170800 Sobic004G202750 Sobic004G202750 Sobic002G399000--Sobic004G202750 Sobic002G399000--Sobic004G305300 Sobic002G399000--Sobic003G118500 Sobic005G025400 Sobic005G025400 Sobic002G399000--Sobic005G025400 Sobic002G085600--Sobic001G113400 Sobic002G001500 Sobic002G001500 Sobic002G085600--Sobic002G001500 Sobic002G085600--Sobic009G192933 Sobic003G362800 Sobic003G362800 Sobic002G085600--Sobic003G362800 Sobic002G085600--Sobic001G191300 Sobic002G085600--Sobic004G305300 Sobic009G223900 Sobic009G223900 Sobic002G085600--Sobic009G223900 Sobic004G144300 Sobic004G144300 Sobic002G085600--Sobic004G144300 Sobic002G398600 Sobic002G398600 Sobic002G085600--Sobic002G398600 Sobic003G118500--Sobic004G305300 Sobic003G118500--Sobic001G104100 Sobic003G118500--Sobic001G191300 Sobic004G310400 Sobic004G310400 Sobic003G118500--Sobic004G310400 Sobic003G118500--Sobic001G350300 Sobic004G026000 Sobic004G026000 Sobic003G118500--Sobic004G026000 Sobic001G096200 Sobic001G096200 Sobic003G118500--Sobic001G096200 Sobic003G118500--Sobic007G077466 Sobic003G118500--Sobic003G362800 Sobic009G192933--Sobic002G085600 Sobic009G192933--Sobic001G113400 Sobic009G192933--Sobic004G144300 Sobic001G019601 Sobic001G019601 Sobic009G192933--Sobic001G019601 Sobic009G192933--Sobic002G001500 Sobic009G192933--Sobic003G362800 Sobic003G001650 Sobic003G001650 Sobic009G192933--Sobic003G001650 Sobic009G192933--Sobic004G305300 Sobic002G274000 Sobic002G274000 Sobic009G192933--Sobic002G274000 Sobic001G367900 Sobic001G367900 Sobic003G050800--Sobic001G367900 Sobic003G149400 Sobic003G149400 Sobic003G050800--Sobic003G149400 Sobic008G065700 Sobic008G065700 Sobic003G050800--Sobic008G065700 Sobic007G010400 Sobic007G010400 Sobic003G050800--Sobic007G010400 Sobic003G050800--Sobic007G077466 Sobic004G224000 Sobic004G224000 Sobic003G050800--Sobic004G224000 Sobic007G226000 Sobic007G226000 Sobic003G050800--Sobic007G226000 Sobic002G234800 Sobic002G234800 Sobic003G050800--Sobic002G234800 Sobic003G133700 Sobic003G133700 Sobic003G050800--Sobic003G133700 Sobic006G170800--Sobic001G350300 Sobic006G170800--Sobic002G320700 Sobic006G170800--Sobic004G305300 Sobic006G170800--Sobic002G399000 Sobic010G242000 Sobic010G242000 Sobic006G170800--Sobic010G242000 Sobic006G170800--Sobic004G350600 Sobic006G170800--Sobic004G202750 Sobic006G170800--Sobic001G104100 Sobic006G170800--Sobic005G025400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.