Gene annotation
Transcriptome id Sobic.009G220300.1
Synonym Sb09g027460
Functional annotation hypothetical protein
UniProt A0A1Z5R3N0
Pfam PF12442
Panther DB PTHR33530 PTHR33530:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g53080.1 : hypothetical protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G004700 - -
2 Sobic.001G243400 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.002G057300 expressed protein -
4 Sobic.004G308000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.007G003200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
6 Sobic.001G293450 - -
7 Sobic.001G009900 pantoate--beta-alanine ligase, putative, expressed K01918: pantoate--beta-alanine ligase
8 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
9 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.006G012900 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
11 Sobic.002G346100 - -
12 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
13 Sobic.008G010750 - -
14 Sobic.005G177500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
16 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
17 Sobic.002G255700 alcohol dehydrogenase GroES-like domain containing protein, expressed -
18 Sobic.010G016800 - -
19 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
20 Sobic.008G150800 Cf-4A protein, putative, expressed -


Gene co-expression network
sample Sobic009G220300 Sobic009G220300 Sobic004G004700 Sobic004G004700 Sobic009G220300--Sobic004G004700 Sobic001G243400 Sobic001G243400 Sobic009G220300--Sobic001G243400 Sobic002G057300 Sobic002G057300 Sobic009G220300--Sobic002G057300 Sobic004G308000 Sobic004G308000 Sobic009G220300--Sobic004G308000 Sobic007G003200 Sobic007G003200 Sobic009G220300--Sobic007G003200 Sobic001G293450 Sobic001G293450 Sobic009G220300--Sobic001G293450 Sobic001G009900 Sobic001G009900 Sobic009G220300--Sobic001G009900 Sobic001G101400 Sobic001G101400 Sobic009G220300--Sobic001G101400 Sobic005G212700 Sobic005G212700 Sobic009G220300--Sobic005G212700 Sobic010G016800 Sobic010G016800 Sobic004G004700--Sobic010G016800 Sobic004G004700--Sobic001G101400 Sobic004G006966 Sobic004G006966 Sobic004G004700--Sobic004G006966 Sobic005G215832 Sobic005G215832 Sobic004G004700--Sobic005G215832 Sobic004G004700--Sobic007G003200 Sobic005G215300 Sobic005G215300 Sobic004G004700--Sobic005G215300 Sobic002G346100 Sobic002G346100 Sobic001G243400--Sobic002G346100 Sobic001G243500 Sobic001G243500 Sobic001G243400--Sobic001G243500 Sobic001G335600 Sobic001G335600 Sobic001G243400--Sobic001G335600 Sobic001G331301 Sobic001G331301 Sobic001G243400--Sobic001G331301 Sobic004G273400 Sobic004G273400 Sobic001G243400--Sobic004G273400 Sobic001G100700 Sobic001G100700 Sobic001G243400--Sobic001G100700 Sobic006G068300 Sobic006G068300 Sobic001G243400--Sobic006G068300 Sobic005G213200 Sobic005G213200 Sobic001G243400--Sobic005G213200 Sobic010G176101 Sobic010G176101 Sobic001G243400--Sobic010G176101 Sobic002G057300--Sobic004G308000 Sobic002G090200 Sobic002G090200 Sobic002G057300--Sobic002G090200 Sobic003G085300 Sobic003G085300 Sobic002G057300--Sobic003G085300 Sobic010G176700 Sobic010G176700 Sobic002G057300--Sobic010G176700 Sobic009G003900 Sobic009G003900 Sobic002G057300--Sobic009G003900 Sobic010G072000 Sobic010G072000 Sobic002G057300--Sobic010G072000 Sobic002G249000 Sobic002G249000 Sobic002G057300--Sobic002G249000 Sobic002G057300--Sobic001G009900 Sobic002G057300--Sobic001G100700 Sobic004G308000--Sobic003G085300 Sobic004G308000--Sobic002G057300 Sobic004G074500 Sobic004G074500 Sobic004G308000--Sobic004G074500 Sobic004G308000--Sobic002G090200 Sobic001G212000 Sobic001G212000 Sobic004G308000--Sobic001G212000 Sobic004G308000--Sobic007G003200 Sobic009G236200 Sobic009G236200 Sobic004G308000--Sobic009G236200 Sobic001G151800 Sobic001G151800 Sobic004G308000--Sobic001G151800 Sobic006G218300 Sobic006G218300 Sobic004G308000--Sobic006G218300 Sobic007G003200--Sobic001G101400 Sobic007G003200--Sobic004G074500 Sobic007G003200--Sobic010G016800 Sobic007G003200--Sobic001G212000 Sobic006G261550 Sobic006G261550 Sobic007G003200--Sobic006G261550 Sobic008G024400 Sobic008G024400 Sobic007G003200--Sobic008G024400 Sobic007G003200--Sobic003G085300 Sobic002G209000 Sobic002G209000 Sobic007G003200--Sobic002G209000 Sobic001G483500 Sobic001G483500 Sobic007G003200--Sobic001G483500 Sobic009G158700 Sobic009G158700 Sobic001G293450--Sobic009G158700 Sobic001G248500 Sobic001G248500 Sobic001G293450--Sobic001G248500 Sobic001G320400 Sobic001G320400 Sobic001G293450--Sobic001G320400 Sobic010G071700 Sobic010G071700 Sobic001G293450--Sobic010G071700 Sobic001G293450--Sobic001G335600 Sobic004G053200 Sobic004G053200 Sobic001G293450--Sobic004G053200 Sobic006G038800 Sobic006G038800 Sobic001G293450--Sobic006G038800 Sobic001G198000 Sobic001G198000 Sobic001G293450--Sobic001G198000 Sobic003G049300 Sobic003G049300 Sobic001G293450--Sobic003G049300 Sobic001G009900--Sobic001G100700 Sobic001G009900--Sobic005G213200 Sobic001G444400 Sobic001G444400 Sobic001G009900--Sobic001G444400 Sobic006G039700 Sobic006G039700 Sobic001G009900--Sobic006G039700 Sobic003G227300 Sobic003G227300 Sobic001G009900--Sobic003G227300 Sobic009G106800 Sobic009G106800 Sobic001G009900--Sobic009G106800 Sobic008G150800 Sobic008G150800 Sobic001G009900--Sobic008G150800 Sobic009G120000 Sobic009G120000 Sobic001G009900--Sobic009G120000 Sobic006G199100 Sobic006G199100 Sobic001G009900--Sobic006G199100 Sobic001G101400--Sobic001G483500 Sobic001G101400--Sobic010G016800 Sobic001G101400--Sobic005G215300 Sobic001G101400--Sobic001G212000 Sobic001G101400--Sobic004G006966 Sobic003G348400 Sobic003G348400 Sobic005G212700--Sobic003G348400 Sobic007G025700 Sobic007G025700 Sobic005G212700--Sobic007G025700 Sobic003G189200 Sobic003G189200 Sobic005G212700--Sobic003G189200 Sobic005G212700--Sobic001G151800 Sobic004G304400 Sobic004G304400 Sobic005G212700--Sobic004G304400 Sobic005G117400 Sobic005G117400 Sobic005G212700--Sobic005G117400 Sobic005G212700--Sobic007G003200 Sobic005G212700--Sobic009G236200 Sobic005G212700--Sobic004G308000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.