Gene annotation
Transcriptome id Sobic.009G241200.4,Sobic.009G241200.3
Synonym ECB2, ATECB2, Sb09g029295, VAC1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt A0A1Z5R3W2
Pfam PF14432 PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF156
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15510 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g49920.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a006063 , Zm00025a044667
Brachypodium KQK04746
Barley HORVU1Hr1G090780.12 , HORVU1Hr1G090780.14 , HORVU1Hr1G090780.9 , HORVU1Hr1G090780.8 , HORVU1Hr1G090780.1 , HORVU1Hr1G090780.3 , HORVU1Hr1G090780.2 , HORVU1Hr1G090780.5 , HORVU1Hr1G090780.7 , HORVU1Hr1G090780.11 , HORVU1Hr1G090780.10 , HORVU1Hr1G090780.13
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219700 pentatricopeptide, putative, expressed -
2 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.001G396000 OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
5 Sobic.010G272800 OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed K03798: ftsH, cell division protease FtsH
6 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
7 Sobic.002G243800 BPI/LBP family protein At3g20270 precursor, putative, expressed -
8 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
10 Sobic.003G301900 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
11 Sobic.001G124100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
12 Sobic.008G130100 protein kinase family protein, putative, expressed -
13 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
14 Sobic.002G193100 expressed protein -
15 Sobic.001G014900 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
16 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
17 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
18 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
19 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
20 Sobic.001G298900 agenet domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G241200 Sobic009G241200 Sobic001G219700 Sobic001G219700 Sobic009G241200--Sobic001G219700 Sobic002G129400 Sobic002G129400 Sobic009G241200--Sobic002G129400 Sobic001G396000 Sobic001G396000 Sobic009G241200--Sobic001G396000 Sobic002G349100 Sobic002G349100 Sobic009G241200--Sobic002G349100 Sobic010G272800 Sobic010G272800 Sobic009G241200--Sobic010G272800 Sobic007G166200 Sobic007G166200 Sobic009G241200--Sobic007G166200 Sobic002G243800 Sobic002G243800 Sobic009G241200--Sobic002G243800 Sobic008G081900 Sobic008G081900 Sobic009G241200--Sobic008G081900 Sobic002G146300 Sobic002G146300 Sobic009G241200--Sobic002G146300 Sobic006G233700 Sobic006G233700 Sobic001G219700--Sobic006G233700 Sobic004G026500 Sobic004G026500 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic003G203300 Sobic003G203300 Sobic001G219700--Sobic003G203300 Sobic001G219700--Sobic008G081900 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic001G219700--Sobic009G241200 Sobic001G219700--Sobic002G349100 Sobic002G129400--Sobic007G166200 Sobic002G129400--Sobic008G081900 Sobic002G072400 Sobic002G072400 Sobic002G129400--Sobic002G072400 Sobic002G129400--Sobic002G349100 Sobic002G081400 Sobic002G081400 Sobic002G129400--Sobic002G081400 Sobic009G093100 Sobic009G093100 Sobic002G129400--Sobic009G093100 Sobic002G129400--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic002G129400--Sobic006G065100 Sobic002G129400--Sobic001G219700 Sobic001G396000--Sobic001G124100 Sobic004G262700 Sobic004G262700 Sobic001G396000--Sobic004G262700 Sobic002G345700 Sobic002G345700 Sobic001G396000--Sobic002G345700 Sobic002G339300 Sobic002G339300 Sobic001G396000--Sobic002G339300 Sobic010G013200 Sobic010G013200 Sobic001G396000--Sobic010G013200 Sobic001G396000--Sobic002G146300 Sobic007G103100 Sobic007G103100 Sobic001G396000--Sobic007G103100 Sobic001G396000--Sobic001G219700 Sobic002G193100 Sobic002G193100 Sobic001G396000--Sobic002G193100 Sobic002G349100--Sobic002G072400 Sobic002G349100--Sobic002G129400 Sobic004G317700 Sobic004G317700 Sobic002G349100--Sobic004G317700 Sobic002G349100--Sobic008G081900 Sobic004G207400 Sobic004G207400 Sobic002G349100--Sobic004G207400 Sobic002G349100--Sobic001G219700 Sobic004G238200 Sobic004G238200 Sobic002G349100--Sobic004G238200 Sobic009G162600 Sobic009G162600 Sobic002G349100--Sobic009G162600 Sobic004G300100 Sobic004G300100 Sobic002G349100--Sobic004G300100 Sobic010G223200 Sobic010G223200 Sobic010G272800--Sobic010G223200 Sobic003G301500 Sobic003G301500 Sobic010G272800--Sobic003G301500 Sobic010G272800--Sobic002G129400 Sobic010G043100 Sobic010G043100 Sobic010G272800--Sobic010G043100 Sobic001G062300 Sobic001G062300 Sobic010G272800--Sobic001G062300 Sobic001G223550 Sobic001G223550 Sobic010G272800--Sobic001G223550 Sobic010G272800--Sobic009G241200 Sobic009G011600 Sobic009G011600 Sobic010G272800--Sobic009G011600 Sobic010G020800 Sobic010G020800 Sobic010G272800--Sobic010G020800 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic007G166200--Sobic004G207400 Sobic009G170200 Sobic009G170200 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic002G243800--Sobic002G146300 Sobic010G227100 Sobic010G227100 Sobic002G243800--Sobic010G227100 Sobic004G001500 Sobic004G001500 Sobic002G243800--Sobic004G001500 Sobic007G190000 Sobic007G190000 Sobic002G243800--Sobic007G190000 Sobic005G001000 Sobic005G001000 Sobic002G243800--Sobic005G001000 Sobic010G139600 Sobic010G139600 Sobic002G243800--Sobic010G139600 Sobic004G356700 Sobic004G356700 Sobic002G243800--Sobic004G356700 Sobic007G075400 Sobic007G075400 Sobic002G243800--Sobic007G075400 Sobic009G053900 Sobic009G053900 Sobic002G243800--Sobic009G053900 Sobic008G081900--Sobic002G129400 Sobic008G081900--Sobic001G219700 Sobic004G307100 Sobic004G307100 Sobic008G081900--Sobic004G307100 Sobic010G035500 Sobic010G035500 Sobic008G081900--Sobic010G035500 Sobic008G081900--Sobic007G166200 Sobic007G169300 Sobic007G169300 Sobic008G081900--Sobic007G169300 Sobic004G300000 Sobic004G300000 Sobic008G081900--Sobic004G300000 Sobic008G081900--Sobic004G026500 Sobic006G030400 Sobic006G030400 Sobic008G081900--Sobic006G030400 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic008G001200 Sobic008G001200 Sobic002G146300--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic002G146300--Sobic001G194200 Sobic002G146300--Sobic007G075400 Sobic009G256400 Sobic009G256400 Sobic002G146300--Sobic009G256400
Octagon: transcription factors


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