Gene annotation
Transcriptome id Sobic.010G115800.1
Synonym ATCOL2, Sb10g010050, SbCO, B-box (BBX) protein, COL2, CO;CONSTANS, SbBBX20;CONSTANS
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
- (PubMedID : 21930910)
floral activator (PubMedID : 24884377)
CCT/B-box zinc finger protein, putative, expressed
UniProt C5Z8J7
Pfam PF00643 PF06203
Panther DB PTHR31319 PTHR31319:SF18
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G02380 : CONSTANS-like 2
RAP-DB (Rice) LOC_Os06g16370.1 : CCT/B-box zinc finger protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT69480
Barley HORVU6Hr1G072620.9 , HORVU6Hr1G072620.8 , HORVU6Hr1G072620.1 , HORVU6Hr1G072620.3 , HORVU6Hr1G072620.2 , HORVU6Hr1G072620.7
Wheat TraesCS6B02G248400 , TraesCS7B02G118300 , TraesCS6A02G289400 , TraesCS6B02G319500 , TraesCS7D02G213000 , TraesCS7D02G213000 , TraesCS6D02G269500 , TraesCS7A02G211300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G246900 expressed protein -
2 Sobic.009G014400 expressed protein -
3 Sobic.009G212700 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
4 Sobic.005G225800 white-brown complex homolog protein 11, putative, expressed -
5 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
6 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
7 Sobic.001G132300 NB-ARC domain containing protein, expressed -
8 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
9 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
10 Sobic.003G325200 disease resistance protein, putative, expressed -
11 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
12 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
13 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
14 Sobic.001G214300 expressed protein -
15 Sobic.009G127900 - -
16 Sobic.005G212500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
18 Sobic.004G142700 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G274600 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
20 Sobic.005G036600 calmodulin-binding protein, putative, expressed -


Gene co-expression network
sample Sobic010G115800 Sobic010G115800 Sobic006G246900 Sobic006G246900 Sobic010G115800--Sobic006G246900 Sobic009G014400 Sobic009G014400 Sobic010G115800--Sobic009G014400 Sobic009G212700 Sobic009G212700 Sobic010G115800--Sobic009G212700 Sobic005G225800 Sobic005G225800 Sobic010G115800--Sobic005G225800 Sobic008G063000 Sobic008G063000 Sobic010G115800--Sobic008G063000 Sobic009G134500 Sobic009G134500 Sobic010G115800--Sobic009G134500 Sobic001G132300 Sobic001G132300 Sobic010G115800--Sobic001G132300 Sobic007G037900 Sobic007G037900 Sobic010G115800--Sobic007G037900 Sobic001G035900 Sobic001G035900 Sobic010G115800--Sobic001G035900 Sobic001G162300 Sobic001G162300 Sobic006G246900--Sobic001G162300 Sobic003G268300 Sobic003G268300 Sobic006G246900--Sobic003G268300 Sobic006G246900--Sobic007G037900 Sobic001G094000 Sobic001G094000 Sobic006G246900--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic006G246900--Sobic002G157000 Sobic006G246900--Sobic009G134500 Sobic006G246900--Sobic008G063000 Sobic001G477800 Sobic001G477800 Sobic006G246900--Sobic001G477800 Sobic007G011400 Sobic007G011400 Sobic006G246900--Sobic007G011400 Sobic007G158100 Sobic007G158100 Sobic009G014400--Sobic007G158100 Sobic009G014400--Sobic010G115800 Sobic006G210100 Sobic006G210100 Sobic009G014400--Sobic006G210100 Sobic009G014400--Sobic006G246900 Sobic008G153600 Sobic008G153600 Sobic009G014400--Sobic008G153600 Sobic009G045700 Sobic009G045700 Sobic009G014400--Sobic009G045700 Sobic003G259901 Sobic003G259901 Sobic009G014400--Sobic003G259901 Sobic004G290800 Sobic004G290800 Sobic009G014400--Sobic004G290800 Sobic009G140500 Sobic009G140500 Sobic009G014400--Sobic009G140500 Sobic005G039500 Sobic005G039500 Sobic009G212700--Sobic005G039500 Sobic004G035000 Sobic004G035000 Sobic009G212700--Sobic004G035000 Sobic005G187200 Sobic005G187200 Sobic009G212700--Sobic005G187200 Sobic007G052900 Sobic007G052900 Sobic009G212700--Sobic007G052900 Sobic004G142700 Sobic004G142700 Sobic009G212700--Sobic004G142700 Sobic009G212700--Sobic007G037900 Sobic007G054000 Sobic007G054000 Sobic009G212700--Sobic007G054000 Sobic001G479500 Sobic001G479500 Sobic009G212700--Sobic001G479500 Sobic009G212700--Sobic009G134500 Sobic005G225800--Sobic005G039500 Sobic005G225800--Sobic001G035900 Sobic010G248700 Sobic010G248700 Sobic005G225800--Sobic010G248700 Sobic002G173000 Sobic002G173000 Sobic005G225800--Sobic002G173000 Sobic005G225800--Sobic004G035000 Sobic003G254000 Sobic003G254000 Sobic005G225800--Sobic003G254000 Sobic010G176550 Sobic010G176550 Sobic005G225800--Sobic010G176550 Sobic002G006600 Sobic002G006600 Sobic005G225800--Sobic002G006600 Sobic001G214300 Sobic001G214300 Sobic005G225800--Sobic001G214300 Sobic008G063000--Sobic001G094000 Sobic008G063000--Sobic003G268300 Sobic008G063000--Sobic006G246900 Sobic008G063000--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500 Sobic009G134500--Sobic006G246900 Sobic006G082600 Sobic006G082600 Sobic009G134500--Sobic006G082600 Sobic009G127900 Sobic009G127900 Sobic009G134500--Sobic009G127900 Sobic009G134500--Sobic001G162300 Sobic009G134500--Sobic002G157000 Sobic008G041700 Sobic008G041700 Sobic009G134500--Sobic008G041700 Sobic009G134500--Sobic005G187200 Sobic009G134500--Sobic007G037900 Sobic007G178700 Sobic007G178700 Sobic009G134500--Sobic007G178700 Sobic001G132300--Sobic002G173000 Sobic001G132300--Sobic005G039500 Sobic003G325200 Sobic003G325200 Sobic001G132300--Sobic003G325200 Sobic001G132300--Sobic003G254000 Sobic001G132300--Sobic009G127900 Sobic008G026900 Sobic008G026900 Sobic001G132300--Sobic008G026900 Sobic001G132300--Sobic001G035900 Sobic001G132300--Sobic009G140500 Sobic001G318432 Sobic001G318432 Sobic001G132300--Sobic001G318432 Sobic007G037900--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic007G037900--Sobic001G420200 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic001G274200 Sobic001G274200 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic001G035900--Sobic003G254000 Sobic002G031400 Sobic002G031400 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000
Octagon: transcription factors


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