Gene annotation
Transcriptome id Sobic.010G134600.1
Synonym Sb10g012871
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A194YIX2
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF904
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G13600 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g36620.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a055797
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G134650 - -
2 Sobic.006G054233 - -
3 Sobic.009G252300 expressed protein -
4 Sobic.007G069101 - -
5 Sobic.002G054200 Rf1, mitochondrial precursor, putative, expressed -
6 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
7 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
8 Sobic.001G065200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
9 Sobic.010G112600 integral membrane protein, putative, expressed -
10 Sobic.008G100300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat domain containing protein, expressed -
11 Sobic.004G194400 expressed protein -
12 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
13 Sobic.006G071362 - K02021: putative ABC transport system ATP-binding protein
14 Sobic.001G478900 pentatricopeptide, putative, expressed -
15 Sobic.003G428000 expressed protein -
16 Sobic.007G082200 white-brown complex homolog protein 11, putative, expressed -
17 Sobic.009G227100 expressed protein -
18 Sobic.001G538800 dual specificity protein phosphatase, putative, expressed -
19 Sobic.003G333200 pentatricopeptide, putative, expressed -
20 Sobic.007G087900 Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic010G134600 Sobic010G134600 Sobic010G134650 Sobic010G134650 Sobic010G134600--Sobic010G134650 Sobic006G054233 Sobic006G054233 Sobic010G134600--Sobic006G054233 Sobic009G252300 Sobic009G252300 Sobic010G134600--Sobic009G252300 Sobic007G069101 Sobic007G069101 Sobic010G134600--Sobic007G069101 Sobic002G054200 Sobic002G054200 Sobic010G134600--Sobic002G054200 Sobic010G277700 Sobic010G277700 Sobic010G134600--Sobic010G277700 Sobic001G257800 Sobic001G257800 Sobic010G134600--Sobic001G257800 Sobic001G065200 Sobic001G065200 Sobic010G134600--Sobic001G065200 Sobic010G112600 Sobic010G112600 Sobic010G134600--Sobic010G112600 Sobic006G071362 Sobic006G071362 Sobic010G134650--Sobic006G071362 Sobic010G134650--Sobic001G257800 Sobic003G385300 Sobic003G385300 Sobic010G134650--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic010G134650--Sobic007G039200 Sobic009G046900 Sobic009G046900 Sobic010G134650--Sobic009G046900 Sobic008G159701 Sobic008G159701 Sobic010G134650--Sobic008G159701 Sobic003G236000 Sobic003G236000 Sobic010G134650--Sobic003G236000 Sobic006G117700 Sobic006G117700 Sobic010G134650--Sobic006G117700 Sobic010G202200 Sobic010G202200 Sobic010G134650--Sobic010G202200 Sobic006G054233--Sobic010G134600 Sobic006G054233--Sobic009G252300 Sobic002G317400 Sobic002G317400 Sobic006G054233--Sobic002G317400 Sobic009G122500 Sobic009G122500 Sobic006G054233--Sobic009G122500 Sobic003G181700 Sobic003G181700 Sobic006G054233--Sobic003G181700 Sobic005G123400 Sobic005G123400 Sobic006G054233--Sobic005G123400 Sobic006G224100 Sobic006G224100 Sobic006G054233--Sobic006G224100 Sobic001G376200 Sobic001G376200 Sobic006G054233--Sobic001G376200 Sobic004G111600 Sobic004G111600 Sobic006G054233--Sobic004G111600 Sobic003G428000 Sobic003G428000 Sobic009G252300--Sobic003G428000 Sobic003G190200 Sobic003G190200 Sobic009G252300--Sobic003G190200 Sobic001G149000 Sobic001G149000 Sobic009G252300--Sobic001G149000 Sobic001G141400 Sobic001G141400 Sobic009G252300--Sobic001G141400 Sobic009G252300--Sobic005G123400 Sobic003G117800 Sobic003G117800 Sobic009G252300--Sobic003G117800 Sobic009G252300--Sobic010G134650 Sobic007G192400 Sobic007G192400 Sobic009G252300--Sobic007G192400 Sobic008G152700 Sobic008G152700 Sobic009G252300--Sobic008G152700 Sobic002G084800 Sobic002G084800 Sobic007G069101--Sobic002G084800 Sobic001G178100 Sobic001G178100 Sobic007G069101--Sobic001G178100 Sobic003G044300 Sobic003G044300 Sobic007G069101--Sobic003G044300 Sobic003G235100 Sobic003G235100 Sobic007G069101--Sobic003G235100 Sobic003G310300 Sobic003G310300 Sobic007G069101--Sobic003G310300 Sobic007G069101--Sobic010G134600 Sobic009G124600 Sobic009G124600 Sobic007G069101--Sobic009G124600 Sobic003G092800 Sobic003G092800 Sobic007G069101--Sobic003G092800 Sobic003G010800 Sobic003G010800 Sobic007G069101--Sobic003G010800 Sobic002G054200--Sobic003G236000 Sobic002G054200--Sobic010G134650 Sobic004G234700 Sobic004G234700 Sobic002G054200--Sobic004G234700 Sobic005G110559 Sobic005G110559 Sobic002G054200--Sobic005G110559 Sobic001G405100 Sobic001G405100 Sobic002G054200--Sobic001G405100 Sobic009G096433 Sobic009G096433 Sobic002G054200--Sobic009G096433 Sobic005G209600 Sobic005G209600 Sobic002G054200--Sobic005G209600 Sobic009G095640 Sobic009G095640 Sobic002G054200--Sobic009G095640 Sobic010G257700 Sobic010G257700 Sobic002G054200--Sobic010G257700 Sobic010G277700--Sobic006G071362 Sobic004G194400 Sobic004G194400 Sobic010G277700--Sobic004G194400 Sobic006G134500 Sobic006G134500 Sobic010G277700--Sobic006G134500 Sobic010G277700--Sobic010G134650 Sobic010G277700--Sobic009G046900 Sobic008G022400 Sobic008G022400 Sobic010G277700--Sobic008G022400 Sobic004G189000 Sobic004G189000 Sobic010G277700--Sobic004G189000 Sobic010G130601 Sobic010G130601 Sobic010G277700--Sobic010G130601 Sobic010G277700--Sobic010G112600 Sobic003G402800 Sobic003G402800 Sobic001G257800--Sobic003G402800 Sobic001G257800--Sobic003G385300 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic010G024400 Sobic010G024400 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic002G074800 Sobic002G074800 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic001G257800--Sobic008G152700 Sobic004G082800 Sobic004G082800 Sobic001G065200--Sobic004G082800 Sobic001G065200--Sobic004G189000 Sobic001G065200--Sobic006G117700 Sobic001G065200--Sobic010G134650 Sobic007G082200 Sobic007G082200 Sobic001G065200--Sobic007G082200 Sobic001G065200--Sobic006G071362 Sobic001G065200--Sobic010G277700 Sobic001G065200--Sobic010G130601 Sobic001G065200--Sobic010G024400 Sobic010G112600--Sobic005G123400 Sobic010G112600--Sobic003G117800 Sobic010G112600--Sobic004G194400 Sobic010G112600--Sobic010G277700 Sobic010G112600--Sobic003G190200 Sobic010G112600--Sobic009G252300 Sobic003G394500 Sobic003G394500 Sobic010G112600--Sobic003G394500 Sobic006G237500 Sobic006G237500 Sobic010G112600--Sobic006G237500 Sobic008G155400 Sobic008G155400 Sobic010G112600--Sobic008G155400
Octagon: transcription factors


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