Gene annotation
Transcriptome id Sobic.010G160400.1
Synonym Sb10g021300
Functional annotation arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
UniProt C5Z447
Pfam PF02153
Panther DB PTHR11811 PTHR11811:SF38
NCBI CDD -
KEGG Orthology K15227; arogenate dehydrogenase (NADP+), plant
Gene Ontology GO:0008977; prephenate dehydrogenase (NAD+) activity GO:0006571tyrosine biosynthetic process GO:0004665prephenate dehydrogenase (NADP+) activity


Orthologs (automatic annotation)
TAIR AT1G15710 : prephenate dehydrogenase family protein
RAP-DB (Rice) LOC_Os06g35050.1 : arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050963 , Zm00025a018433
Brachypodium KQK18154 , PNT75563
Barley HORVU7Hr1G095490.3 , HORVU7Hr1G080460.4 , HORVU7Hr1G080460.3 , HORVU7Hr1G080460.2 , HORVU7Hr1G080460.1 , HORVU7Hr1G095550.2 , HORVU7Hr1G095490.1 , HORVU7Hr1G095490.2 , HORVU7Hr1G095490.4 , HORVU7Hr1G095550.1
Wheat TraesCS7D02G333700 , TraesCS7A02G345600 , TraesCS7B02G237700 , TraesCS7B02G237700
Populus -


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cDNA sequences
Sobic.010G160400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
2 Sobic.005G204700 polygalacturonase, putative, expressed -
3 Sobic.003G293000 expressed protein -
4 Sobic.010G090500 expressed protein -
5 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
6 Sobic.004G225700 F-box/LRR-repeat protein 2, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
7 Sobic.009G013700 pectinacetylesterase domain containing protein, expressed -
8 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
9 Sobic.001G366800 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase
10 Sobic.003G131200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
11 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
12 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
13 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.003G077500 expressed protein -
15 Sobic.009G123500 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed -
16 Sobic.003G198500 XIK, putative, expressed K10357: myosin V
17 Sobic.001G322000 pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
18 Sobic.006G279900 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
19 Sobic.003G347300 TBC domain containing protein, expressed -
20 Sobic.010G099800 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic010G160400 Sobic010G160400 Sobic002G393200 Sobic002G393200 Sobic010G160400--Sobic002G393200 Sobic005G204700 Sobic005G204700 Sobic010G160400--Sobic005G204700 Sobic003G293000 Sobic003G293000 Sobic010G160400--Sobic003G293000 Sobic010G090500 Sobic010G090500 Sobic010G160400--Sobic010G090500 Sobic003G005900 Sobic003G005900 Sobic010G160400--Sobic003G005900 Sobic004G225700 Sobic004G225700 Sobic010G160400--Sobic004G225700 Sobic009G013700 Sobic009G013700 Sobic010G160400--Sobic009G013700 Sobic006G267500 Sobic006G267500 Sobic010G160400--Sobic006G267500 Sobic001G366800 Sobic001G366800 Sobic010G160400--Sobic001G366800 Sobic008G148500 Sobic008G148500 Sobic002G393200--Sobic008G148500 Sobic006G254500 Sobic006G254500 Sobic002G393200--Sobic006G254500 Sobic002G393200--Sobic005G204700 Sobic004G152200 Sobic004G152200 Sobic002G393200--Sobic004G152200 Sobic002G161700 Sobic002G161700 Sobic002G393200--Sobic002G161700 Sobic003G131200 Sobic003G131200 Sobic002G393200--Sobic003G131200 Sobic009G206500 Sobic009G206500 Sobic002G393200--Sobic009G206500 Sobic002G143200 Sobic002G143200 Sobic002G393200--Sobic002G143200 Sobic002G393200--Sobic006G267500 Sobic005G204700--Sobic006G267500 Sobic005G204700--Sobic002G393200 Sobic005G204700--Sobic009G206500 Sobic004G249100 Sobic004G249100 Sobic005G204700--Sobic004G249100 Sobic001G116000 Sobic001G116000 Sobic005G204700--Sobic001G116000 Sobic005G204700--Sobic010G090500 Sobic004G051300 Sobic004G051300 Sobic005G204700--Sobic004G051300 Sobic010G042600 Sobic010G042600 Sobic005G204700--Sobic010G042600 Sobic003G151300 Sobic003G151300 Sobic005G204700--Sobic003G151300 Sobic003G240700 Sobic003G240700 Sobic003G293000--Sobic003G240700 Sobic001G012900 Sobic001G012900 Sobic003G293000--Sobic001G012900 Sobic009G049400 Sobic009G049400 Sobic003G293000--Sobic009G049400 Sobic001G335900 Sobic001G335900 Sobic003G293000--Sobic001G335900 Sobic003G293000--Sobic003G005900 Sobic003G334700 Sobic003G334700 Sobic003G293000--Sobic003G334700 Sobic005G059500 Sobic005G059500 Sobic003G293000--Sobic005G059500 Sobic001G474400 Sobic001G474400 Sobic003G293000--Sobic001G474400 Sobic003G314700 Sobic003G314700 Sobic003G293000--Sobic003G314700 Sobic001G159800 Sobic001G159800 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic001G437500 Sobic001G437500 Sobic010G090500--Sobic001G437500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic009G061000 Sobic009G061000 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic005G114500 Sobic005G114500 Sobic003G005900--Sobic005G114500 Sobic003G130900 Sobic003G130900 Sobic003G005900--Sobic003G130900 Sobic006G265600 Sobic006G265600 Sobic003G005900--Sobic006G265600 Sobic003G005900--Sobic003G293000 Sobic003G005900--Sobic001G474400 Sobic004G151200 Sobic004G151200 Sobic003G005900--Sobic004G151200 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic008G086200 Sobic008G086200 Sobic004G225700--Sobic008G086200 Sobic002G218700 Sobic002G218700 Sobic004G225700--Sobic002G218700 Sobic003G077500 Sobic003G077500 Sobic004G225700--Sobic003G077500 Sobic004G225700--Sobic002G393200 Sobic009G175200 Sobic009G175200 Sobic004G225700--Sobic009G175200 Sobic001G385400 Sobic001G385400 Sobic004G225700--Sobic001G385400 Sobic005G159600 Sobic005G159600 Sobic004G225700--Sobic005G159600 Sobic004G225700--Sobic006G254500 Sobic004G134100 Sobic004G134100 Sobic004G225700--Sobic004G134100 Sobic009G030300 Sobic009G030300 Sobic009G013700--Sobic009G030300 Sobic008G008400 Sobic008G008400 Sobic009G013700--Sobic008G008400 Sobic006G033700 Sobic006G033700 Sobic009G013700--Sobic006G033700 Sobic010G242900 Sobic010G242900 Sobic009G013700--Sobic010G242900 Sobic001G215900 Sobic001G215900 Sobic009G013700--Sobic001G215900 Sobic001G226000 Sobic001G226000 Sobic009G013700--Sobic001G226000 Sobic003G347300 Sobic003G347300 Sobic009G013700--Sobic003G347300 Sobic002G168600 Sobic002G168600 Sobic009G013700--Sobic002G168600 Sobic009G013700--Sobic002G218700 Sobic006G267500--Sobic009G061000 Sobic006G267500--Sobic009G206500 Sobic009G212100 Sobic009G212100 Sobic006G267500--Sobic009G212100 Sobic006G267500--Sobic006G254500 Sobic006G267500--Sobic001G437500 Sobic004G315700 Sobic004G315700 Sobic006G267500--Sobic004G315700 Sobic006G267500--Sobic010G090500 Sobic006G267500--Sobic005G204700 Sobic001G296800 Sobic001G296800 Sobic006G267500--Sobic001G296800 Sobic009G055400 Sobic009G055400 Sobic001G366800--Sobic009G055400 Sobic001G366800--Sobic001G215900 Sobic002G301500 Sobic002G301500 Sobic001G366800--Sobic002G301500 Sobic001G366800--Sobic004G134100 Sobic006G177300 Sobic006G177300 Sobic001G366800--Sobic006G177300 Sobic004G247300 Sobic004G247300 Sobic001G366800--Sobic004G247300 Sobic001G366800--Sobic002G393200 Sobic010G138500 Sobic010G138500 Sobic001G366800--Sobic010G138500 Sobic001G366800--Sobic010G242900
Octagon: transcription factors


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