Gene annotation
Transcriptome id Sobic.010G178300.1
Synonym REF1, ALDH1A, Sb10g023000, ALDH2C4
Functional annotation aldehyde dehydrogenase, putative, expressed
UniProt A0A194YJY8
Pfam PF00171
Panther DB PTHR11699 PTHR11699:SF157
NCBI CDD -
KEGG Orthology K12355; coniferyl-aldehyde dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G24503 : aldehyde dehydrogenase 2C4
RAP-DB (Rice) LOC_Os01g40870.1 : aldehyde dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a038433 , Zm00025a042275 , Zm00025a028546 , Zm00025a028547
Brachypodium KQK08537 , KQK08538 , KQK17840
Barley HORVU7Hr1G085120.11 , HORVU7Hr1G085120.10 , HORVU7Hr1G085120.13 , HORVU7Hr1G085120.12 , HORVU7Hr1G085120.5 , HORVU7Hr1G085120.4 , HORVU7Hr1G085120.7 , HORVU7Hr1G085120.6 , HORVU7Hr1G085120.1 , HORVU7Hr1G085120.3 , HORVU7Hr1G085120.2 , HORVU7Hr1G085120.9 , HORVU7Hr1G085120.8 , HORVU3Hr1G092680.8 , HORVU3Hr1G092680.9 , HORVU3Hr1G092680.4 , HORVU3Hr1G092680.5 , HORVU3Hr1G092680.7 , HORVU3Hr1G092680.1 , HORVU3Hr1G092680.2 , HORVU3Hr1G092680.3 , HORVU3Hr1G092680.10 , HORVU3Hr1G092680.11
Wheat TraesCS7B02G259100 , TraesCS3B02G452100 , TraesCS7D02G353900 , TraesCS7B02G259200 , TraesCS7A02G369300 , TraesCS3A02G417200 , TraesCS3A02G417200 , TraesCS3D02G412700 , TraesCS3D02G412700 , TraesCS7D02G354000 , TraesCS7A02G369400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G238801 - -
2 Sobic.010G241100 thaumatin family domain containing protein, expressed -
3 Sobic.010G269700 expressed protein -
4 Sobic.001G148450 - -
5 Sobic.005G157300 protein binding protein, putative, expressed -
6 Sobic.002G272300 expressed protein -
7 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
9 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
10 Sobic.003G001751 - -
11 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
12 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
13 Sobic.006G142500 protein kinase, putative, expressed -
14 Sobic.010G023400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
15 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
16 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
17 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
18 Sobic.004G234500 eukaryotic aspartyl protease domain containing protein, expressed -
19 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
20 Sobic.003G055600 expressed protein -


Gene co-expression network
sample Sobic010G178300 Sobic010G178300 Sobic004G238801 Sobic004G238801 Sobic010G178300--Sobic004G238801 Sobic010G241100 Sobic010G241100 Sobic010G178300--Sobic010G241100 Sobic010G269700 Sobic010G269700 Sobic010G178300--Sobic010G269700 Sobic001G148450 Sobic001G148450 Sobic010G178300--Sobic001G148450 Sobic005G157300 Sobic005G157300 Sobic010G178300--Sobic005G157300 Sobic002G272300 Sobic002G272300 Sobic010G178300--Sobic002G272300 Sobic003G032200 Sobic003G032200 Sobic010G178300--Sobic003G032200 Sobic004G243900 Sobic004G243900 Sobic010G178300--Sobic004G243900 Sobic001G377700 Sobic001G377700 Sobic010G178300--Sobic001G377700 Sobic007G121650 Sobic007G121650 Sobic004G238801--Sobic007G121650 Sobic004G238801--Sobic010G178300 Sobic004G238801--Sobic005G157300 Sobic010G204700 Sobic010G204700 Sobic004G238801--Sobic010G204700 Sobic004G238801--Sobic002G272300 Sobic004G238801--Sobic001G148450 Sobic004G238801--Sobic001G377700 Sobic003G320300 Sobic003G320300 Sobic004G238801--Sobic003G320300 Sobic001G439400 Sobic001G439400 Sobic004G238801--Sobic001G439400 Sobic010G192500 Sobic010G192500 Sobic010G241100--Sobic010G192500 Sobic010G086000 Sobic010G086000 Sobic010G241100--Sobic010G086000 Sobic010G241100--Sobic003G032200 Sobic002G337600 Sobic002G337600 Sobic010G241100--Sobic002G337600 Sobic002G394500 Sobic002G394500 Sobic010G241100--Sobic002G394500 Sobic002G222500 Sobic002G222500 Sobic010G241100--Sobic002G222500 Sobic010G023400 Sobic010G023400 Sobic010G241100--Sobic010G023400 Sobic001G452900 Sobic001G452900 Sobic010G241100--Sobic001G452900 Sobic007G160300 Sobic007G160300 Sobic010G241100--Sobic007G160300 Sobic006G274200 Sobic006G274200 Sobic010G269700--Sobic006G274200 Sobic003G019900 Sobic003G019900 Sobic010G269700--Sobic003G019900 Sobic010G269700--Sobic002G222500 Sobic003G373900 Sobic003G373900 Sobic010G269700--Sobic003G373900 Sobic010G092400 Sobic010G092400 Sobic010G269700--Sobic010G092400 Sobic010G269700--Sobic010G086000 Sobic003G002000 Sobic003G002000 Sobic010G269700--Sobic003G002000 Sobic005G020100 Sobic005G020100 Sobic010G269700--Sobic005G020100 Sobic010G269700--Sobic010G241100 Sobic006G172000 Sobic006G172000 Sobic001G148450--Sobic006G172000 Sobic001G148450--Sobic004G238801 Sobic001G148450--Sobic010G178300 Sobic007G082500 Sobic007G082500 Sobic001G148450--Sobic007G082500 Sobic006G041700 Sobic006G041700 Sobic001G148450--Sobic006G041700 Sobic003G251700 Sobic003G251700 Sobic001G148450--Sobic003G251700 Sobic004G207766 Sobic004G207766 Sobic001G148450--Sobic004G207766 Sobic004G330200 Sobic004G330200 Sobic001G148450--Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic001G148450--Sobic002G175200 Sobic009G143200 Sobic009G143200 Sobic005G157300--Sobic009G143200 Sobic003G055600 Sobic003G055600 Sobic005G157300--Sobic003G055600 Sobic003G183700 Sobic003G183700 Sobic005G157300--Sobic003G183700 Sobic005G157300--Sobic001G377700 Sobic001G054700 Sobic001G054700 Sobic005G157300--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic005G157300--Sobic006G221300 Sobic007G187700 Sobic007G187700 Sobic005G157300--Sobic007G187700 Sobic009G172950 Sobic009G172950 Sobic005G157300--Sobic009G172950 Sobic009G127800 Sobic009G127800 Sobic005G157300--Sobic009G127800 Sobic007G007800 Sobic007G007800 Sobic002G272300--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic002G272300--Sobic009G184200 Sobic010G147700 Sobic010G147700 Sobic002G272300--Sobic010G147700 Sobic002G272300--Sobic003G032200 Sobic009G087000 Sobic009G087000 Sobic002G272300--Sobic009G087000 Sobic001G083300 Sobic001G083300 Sobic002G272300--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic002G272300--Sobic004G331600 Sobic008G129200 Sobic008G129200 Sobic002G272300--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic002G272300--Sobic001G456500 Sobic003G032200--Sobic009G184200 Sobic003G032200--Sobic010G086000 Sobic010G105400 Sobic010G105400 Sobic003G032200--Sobic010G105400 Sobic003G032200--Sobic010G241100 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400 Sobic004G243900--Sobic009G087000 Sobic004G243900--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic004G243900--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic004G243900--Sobic006G051000 Sobic005G110535 Sobic005G110535 Sobic004G243900--Sobic005G110535 Sobic003G292700 Sobic003G292700 Sobic004G243900--Sobic003G292700 Sobic004G243900--Sobic010G147700 Sobic003G289800 Sobic003G289800 Sobic004G243900--Sobic003G289800 Sobic004G243900--Sobic008G129200 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.