Gene annotation
Transcriptome id Sobic.010G213800.1
Synonym Sb10g026040, ATGDU3, GDU3, LSB1
Functional annotation GDU1, putative, expressed
UniProt C5Z773
Pfam -
Panther DB PTHR33228 PTHR33228:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57685 : glutamine dumper 3
RAP-DB (Rice) LOC_Os06g44420.1 : GDU1, putative, expressed
MaizeGDB (Corn) Zm00025a051717 , Zm00025a042011
Brachypodium -
Barley HORVU7Hr1G111320.1 , HORVU1Hr1G003070.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
2 Sobic.002G224500 down-regulated TF in developmental senescence(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
3 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
4 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
6 Sobic.002G261100 expressed protein -
7 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G200566 - -
9 Sobic.001G279300 Up-reguralion under heat(PubMedID : 24916767)@VQ domain containing protein, putative, expressed -
10 Sobic.010G166500 amino acid transporter, putative, expressed -
11 Sobic.010G225251 - -
12 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.003G376100 4,5-DOPA dioxygenase extradiol, putative, expressed K15777: 4,5-DOPA dioxygenase extradiol
14 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
15 Sobic.001G138600 VQ domain containing protein, putative, expressed -
16 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
17 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
18 Sobic.002G261200 expressed protein -
19 Sobic.003G369100 AP2 domain containing protein, expressed -
20 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase


Gene co-expression network
sample Sobic010G213800 Sobic010G213800 Sobic003G367200 Sobic003G367200 Sobic010G213800--Sobic003G367200 Sobic002G224500 Sobic002G224500 Sobic010G213800--Sobic002G224500 Sobic004G336500 Sobic004G336500 Sobic010G213800--Sobic004G336500 Sobic001G112200 Sobic001G112200 Sobic010G213800--Sobic001G112200 Sobic002G389400 Sobic002G389400 Sobic010G213800--Sobic002G389400 Sobic002G261100 Sobic002G261100 Sobic010G213800--Sobic002G261100 Sobic010G198600 Sobic010G198600 Sobic010G213800--Sobic010G198600 Sobic009G200566 Sobic009G200566 Sobic010G213800--Sobic009G200566 Sobic001G279300 Sobic001G279300 Sobic010G213800--Sobic001G279300 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G382800 Sobic003G382800 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic002G224500--Sobic003G367200 Sobic003G334600 Sobic003G334600 Sobic002G224500--Sobic003G334600 Sobic002G224500--Sobic003G369100 Sobic002G224500--Sobic004G336500 Sobic002G224500--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic002G224500--Sobic001G138600 Sobic002G224500--Sobic004G280200 Sobic006G190100 Sobic006G190100 Sobic002G224500--Sobic006G190100 Sobic002G224500--Sobic003G382800 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic004G336500--Sobic001G138600 Sobic009G184000 Sobic009G184000 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic002G389400--Sobic001G112200 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic002G389400--Sobic003G367200 Sobic004G321300 Sobic004G321300 Sobic002G389400--Sobic004G321300 Sobic002G389400--Sobic010G225251 Sobic002G389400--Sobic004G336500 Sobic010G166500 Sobic010G166500 Sobic002G389400--Sobic010G166500 Sobic002G389400--Sobic001G138600 Sobic002G261100--Sobic003G367200 Sobic002G261100--Sobic004G280200 Sobic002G261200 Sobic002G261200 Sobic002G261100--Sobic002G261200 Sobic006G056400 Sobic006G056400 Sobic002G261100--Sobic006G056400 Sobic002G261100--Sobic001G112200 Sobic002G261100--Sobic010G166500 Sobic002G261100--Sobic003G334600 Sobic002G261100--Sobic001G138600 Sobic002G261100--Sobic002G224500 Sobic010G198600--Sobic001G280800 Sobic010G198600--Sobic001G138600 Sobic010G198600--Sobic003G382800 Sobic010G198600--Sobic001G169500 Sobic010G198600--Sobic004G336500 Sobic010G198600--Sobic006G190100 Sobic010G198600--Sobic002G261200 Sobic003G432700 Sobic003G432700 Sobic010G198600--Sobic003G432700 Sobic010G198600--Sobic009G184000 Sobic009G200566--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic009G200566--Sobic009G145600 Sobic009G200566--Sobic001G112200 Sobic008G158800 Sobic008G158800 Sobic009G200566--Sobic008G158800 Sobic008G066401 Sobic008G066401 Sobic009G200566--Sobic008G066401 Sobic009G184100 Sobic009G184100 Sobic009G200566--Sobic009G184100 Sobic004G245700 Sobic004G245700 Sobic009G200566--Sobic004G245700 Sobic008G066200 Sobic008G066200 Sobic009G200566--Sobic008G066200 Sobic002G055700 Sobic002G055700 Sobic009G200566--Sobic002G055700 Sobic001G279300--Sobic001G280800 Sobic001G279300--Sobic010G225251 Sobic001G279300--Sobic004G336500 Sobic001G279300--Sobic009G069800 Sobic001G279300--Sobic009G145700 Sobic001G279300--Sobic001G112200 Sobic001G279300--Sobic010G198600 Sobic002G042000 Sobic002G042000 Sobic001G279300--Sobic002G042000 Sobic001G279300--Sobic007G008100
Octagon: transcription factors


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