Gene annotation
Transcriptome id Sobic.010G215600.1,Sobic.010G215600.3,Sobic.010G215600.2
Synonym Sb10g026190, VTE2, TPT1, HPT1, ATHPT
Functional annotation prenyltransferase, putative, expressed
UniProt A0A1W0VU66 , A0A1W0VU49 , C5Z789
Pfam PF01040
Panther DB PTHR11048 PTHR11048:SF26
NCBI CDD -
KEGG Orthology K09833; HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
Gene Ontology GO:0016021; integral component of membrane GO:0004659prenyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G18950 : homogentisate phytyltransferase 1
RAP-DB (Rice) LOC_Os06g44840.1 : prenyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a051688
Brachypodium KQK16909 , KQK16910
Barley HORVU7Hr1G110990.5 , HORVU7Hr1G110990.4 , HORVU7Hr1G110990.7 , HORVU7Hr1G110990.6 , HORVU7Hr1G110990.1 , HORVU7Hr1G110990.3 , HORVU7Hr1G110990.2 , HORVU7Hr1G110990.8
Wheat TraesCS7A02G495400 , TraesCS7D02G482600 , TraesCS7D02G482600 , TraesCS7B02G401900
Populus -


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cDNA sequences
Sobic.010G215600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378000 amidase family protein, putative, expressed -
2 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
3 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
4 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
5 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
6 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
7 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
8 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
11 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
12 Sobic.004G265900 class I glutamine amidotransferase, putative, expressed K01956: carA, carbamoyl-phosphate synthase small subunit
13 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
14 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
15 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
16 Sobic.001G445200 expressed protein -
17 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
18 Sobic.002G181132 - -
19 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
20 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -


Gene co-expression network
sample Sobic010G215600 Sobic010G215600 Sobic002G378000 Sobic002G378000 Sobic010G215600--Sobic002G378000 Sobic001G448600 Sobic001G448600 Sobic010G215600--Sobic001G448600 Sobic006G091300 Sobic006G091300 Sobic010G215600--Sobic006G091300 Sobic001G114400 Sobic001G114400 Sobic010G215600--Sobic001G114400 Sobic006G237100 Sobic006G237100 Sobic010G215600--Sobic006G237100 Sobic001G321400 Sobic001G321400 Sobic010G215600--Sobic001G321400 Sobic002G191100 Sobic002G191100 Sobic010G215600--Sobic002G191100 Sobic010G011200 Sobic010G011200 Sobic010G215600--Sobic010G011200 Sobic003G310100 Sobic003G310100 Sobic010G215600--Sobic003G310100 Sobic008G067100 Sobic008G067100 Sobic002G378000--Sobic008G067100 Sobic010G086900 Sobic010G086900 Sobic002G378000--Sobic010G086900 Sobic001G281500 Sobic001G281500 Sobic002G378000--Sobic001G281500 Sobic002G378000--Sobic003G310100 Sobic009G104700 Sobic009G104700 Sobic002G378000--Sobic009G104700 Sobic003G128400 Sobic003G128400 Sobic002G378000--Sobic003G128400 Sobic007G101300 Sobic007G101300 Sobic002G378000--Sobic007G101300 Sobic005G184300 Sobic005G184300 Sobic002G378000--Sobic005G184300 Sobic001G424300 Sobic001G424300 Sobic002G378000--Sobic001G424300 Sobic001G375000 Sobic001G375000 Sobic001G448600--Sobic001G375000 Sobic004G255500 Sobic004G255500 Sobic001G448600--Sobic004G255500 Sobic002G140000 Sobic002G140000 Sobic001G448600--Sobic002G140000 Sobic001G448600--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic001G448600--Sobic002G013700 Sobic001G448600--Sobic009G104700 Sobic007G015300 Sobic007G015300 Sobic001G448600--Sobic007G015300 Sobic001G448600--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic001G448600--Sobic010G027200 Sobic004G055500 Sobic004G055500 Sobic006G091300--Sobic004G055500 Sobic006G106400 Sobic006G106400 Sobic006G091300--Sobic006G106400 Sobic001G291900 Sobic001G291900 Sobic006G091300--Sobic001G291900 Sobic008G172700 Sobic008G172700 Sobic006G091300--Sobic008G172700 Sobic004G301200 Sobic004G301200 Sobic006G091300--Sobic004G301200 Sobic003G162900 Sobic003G162900 Sobic006G091300--Sobic003G162900 Sobic004G165000 Sobic004G165000 Sobic006G091300--Sobic004G165000 Sobic006G047300 Sobic006G047300 Sobic006G091300--Sobic006G047300 Sobic001G277400 Sobic001G277400 Sobic006G091300--Sobic001G277400 Sobic003G222600 Sobic003G222600 Sobic001G114400--Sobic003G222600 Sobic001G114400--Sobic002G191100 Sobic003G030400 Sobic003G030400 Sobic001G114400--Sobic003G030400 Sobic009G036300 Sobic009G036300 Sobic001G114400--Sobic009G036300 Sobic004G070200 Sobic004G070200 Sobic001G114400--Sobic004G070200 Sobic008G148400 Sobic008G148400 Sobic001G114400--Sobic008G148400 Sobic010G039200 Sobic010G039200 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100 Sobic001G321400--Sobic002G140000 Sobic001G321400--Sobic010G027200 Sobic006G263800 Sobic006G263800 Sobic001G321400--Sobic006G263800 Sobic001G321400--Sobic007G116100 Sobic001G321400--Sobic004G255500 Sobic006G281066 Sobic006G281066 Sobic001G321400--Sobic006G281066 Sobic001G321400--Sobic006G237100 Sobic001G321400--Sobic007G015300 Sobic001G395300 Sobic001G395300 Sobic001G321400--Sobic001G395300 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic003G039300 Sobic003G039300 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic002G191100--Sobic004G070200 Sobic005G110481 Sobic005G110481 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600
Octagon: transcription factors


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