Gene annotation
Transcriptome id Sobic.001G002700.1
Synonym PP1-AT, TOPP1
Functional annotation Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5WRV1
Pfam PF16891 PF00149
Panther DB PTHR11668 PTHR11668:SF280
NCBI CDD KOG0374; Serine/threonine specific protein phosphatase PP1, catalytic subunit
KEGG Orthology K06269; serine/threonine-protein phosphatase PP1 catalytic subunit
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G64040 : type one serine/threonine protein phosphatase 3
RAP-DB (Rice) LOC_Os06g06880.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005759 , Zm00025a008490 , Zm00025a020121
Brachypodium KQK11962 , KQJ98548
Barley HORVU6Hr1G092760.8 , HORVU6Hr1G092760.2 , HORVU6Hr1G092760.3 , HORVU6Hr1G092760.1 , HORVU6Hr1G092760.6 , HORVU6Hr1G092760.7 , HORVU6Hr1G092760.4 , HORVU6Hr1G092760.5
Wheat TraesCS4A02G315000 , TraesCS6D02G388000 , TraesCS5B02G565000 , TraesCS6A02G404700 , TraesCS6B02G449000 , TraesCS5D02G549800
Populus -


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cDNA sequences
Sobic.001G002700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G119001 - -
2 Sobic.009G184900 OsDegp8 - Putative Deg protease homologue, expressed -
3 Sobic.007G002600 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
4 Sobic.001G291400 methyltransferase, putative, expressed -
5 Sobic.001G092250 - -
6 Sobic.003G115000 - -
7 Sobic.002G300600 thioredoxin, putative, expressed -
8 Sobic.010G219900 expressed protein -
9 Sobic.001G212100 GEM, putative, expressed -
10 Sobic.010G162200 serine/threonine-protein kinase 19, putative, expressed K08880: serine/threonine kinase 19
11 Sobic.003G094000 fruit protein PKIWI502, putative, expressed -
12 Sobic.001G351100 LOL3, putative, expressed -
13 Sobic.006G211100 RNA recognition motif containing protein, putative, expressed K14787: MRD1, multiple RNA-binding domain-containing protein 1
14 Sobic.004G128100 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
15 Sobic.003G301400 DNA-directed polymerase, putative, expressed K03509: DNA polymerase eta
16 Sobic.001G132300 NB-ARC domain containing protein, expressed -
17 Sobic.004G262000 RNA recognition motif containing protein, putative, expressed -
18 Sobic.009G133800 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed -
19 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
20 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase


Gene co-expression network
sample Sobic001G002700 Sobic001G002700 Sobic005G119001 Sobic005G119001 Sobic001G002700--Sobic005G119001 Sobic009G184900 Sobic009G184900 Sobic001G002700--Sobic009G184900 Sobic007G002600 Sobic007G002600 Sobic001G002700--Sobic007G002600 Sobic001G291400 Sobic001G291400 Sobic001G002700--Sobic001G291400 Sobic001G092250 Sobic001G092250 Sobic001G002700--Sobic001G092250 Sobic003G115000 Sobic003G115000 Sobic001G002700--Sobic003G115000 Sobic002G300600 Sobic002G300600 Sobic001G002700--Sobic002G300600 Sobic010G219900 Sobic010G219900 Sobic001G002700--Sobic010G219900 Sobic001G212100 Sobic001G212100 Sobic001G002700--Sobic001G212100 Sobic005G119001--Sobic009G184900 Sobic005G119001--Sobic001G002700 Sobic005G086250 Sobic005G086250 Sobic005G119001--Sobic005G086250 Sobic005G119001--Sobic001G291400 Sobic003G080000 Sobic003G080000 Sobic005G119001--Sobic003G080000 Sobic002G287400 Sobic002G287400 Sobic005G119001--Sobic002G287400 Sobic005G119001--Sobic001G212100 Sobic005G119001--Sobic003G115000 Sobic005G119001--Sobic001G092250 Sobic009G210000 Sobic009G210000 Sobic009G184900--Sobic009G210000 Sobic007G020500 Sobic007G020500 Sobic009G184900--Sobic007G020500 Sobic009G184900--Sobic005G086250 Sobic001G359900 Sobic001G359900 Sobic009G184900--Sobic001G359900 Sobic003G334200 Sobic003G334200 Sobic009G184900--Sobic003G334200 Sobic003G290800 Sobic003G290800 Sobic009G184900--Sobic003G290800 Sobic007G202900 Sobic007G202900 Sobic009G184900--Sobic007G202900 Sobic009G008400 Sobic009G008400 Sobic009G184900--Sobic009G008400 Sobic007G116200 Sobic007G116200 Sobic009G184900--Sobic007G116200 Sobic003G372500 Sobic003G372500 Sobic007G002600--Sobic003G372500 Sobic003G313500 Sobic003G313500 Sobic007G002600--Sobic003G313500 Sobic003G221900 Sobic003G221900 Sobic007G002600--Sobic003G221900 Sobic006G086500 Sobic006G086500 Sobic007G002600--Sobic006G086500 Sobic007G193700 Sobic007G193700 Sobic007G002600--Sobic007G193700 Sobic004G238900 Sobic004G238900 Sobic007G002600--Sobic004G238900 Sobic001G481900 Sobic001G481900 Sobic007G002600--Sobic001G481900 Sobic003G247300 Sobic003G247300 Sobic007G002600--Sobic003G247300 Sobic002G346200 Sobic002G346200 Sobic007G002600--Sobic002G346200 Sobic006G095100 Sobic006G095100 Sobic001G291400--Sobic006G095100 Sobic004G343400 Sobic004G343400 Sobic001G291400--Sobic004G343400 Sobic003G030500 Sobic003G030500 Sobic001G291400--Sobic003G030500 Sobic004G157700 Sobic004G157700 Sobic001G291400--Sobic004G157700 Sobic006G148400 Sobic006G148400 Sobic001G291400--Sobic006G148400 Sobic001G291400--Sobic005G086250 Sobic001G291400--Sobic005G119001 Sobic001G087800 Sobic001G087800 Sobic001G291400--Sobic001G087800 Sobic002G224800 Sobic002G224800 Sobic001G291400--Sobic002G224800 Sobic001G092250--Sobic003G030500 Sobic007G113101 Sobic007G113101 Sobic001G092250--Sobic007G113101 Sobic003G124000 Sobic003G124000 Sobic001G092250--Sobic003G124000 Sobic006G102200 Sobic006G102200 Sobic001G092250--Sobic006G102200 Sobic004G246000 Sobic004G246000 Sobic001G092250--Sobic004G246000 Sobic007G085400 Sobic007G085400 Sobic001G092250--Sobic007G085400 Sobic001G092250--Sobic006G095100 Sobic001G060732 Sobic001G060732 Sobic001G092250--Sobic001G060732 Sobic010G186900 Sobic010G186900 Sobic001G092250--Sobic010G186900 Sobic004G219400 Sobic004G219400 Sobic003G115000--Sobic004G219400 Sobic002G006600 Sobic002G006600 Sobic003G115000--Sobic002G006600 Sobic007G226600 Sobic007G226600 Sobic003G115000--Sobic007G226600 Sobic003G136900 Sobic003G136900 Sobic003G115000--Sobic003G136900 Sobic003G017100 Sobic003G017100 Sobic003G115000--Sobic003G017100 Sobic005G045000 Sobic005G045000 Sobic003G115000--Sobic005G045000 Sobic008G026900 Sobic008G026900 Sobic003G115000--Sobic008G026900 Sobic001G016201 Sobic001G016201 Sobic003G115000--Sobic001G016201 Sobic003G115000--Sobic009G184900 Sobic003G222900 Sobic003G222900 Sobic002G300600--Sobic003G222900 Sobic004G244400 Sobic004G244400 Sobic002G300600--Sobic004G244400 Sobic001G032700 Sobic001G032700 Sobic002G300600--Sobic001G032700 Sobic006G204600 Sobic006G204600 Sobic002G300600--Sobic006G204600 Sobic001G132300 Sobic001G132300 Sobic002G300600--Sobic001G132300 Sobic002G300600--Sobic009G184900 Sobic002G300600--Sobic003G115000 Sobic003G343400 Sobic003G343400 Sobic002G300600--Sobic003G343400 Sobic004G341900 Sobic004G341900 Sobic002G300600--Sobic004G341900 Sobic001G158900 Sobic001G158900 Sobic010G219900--Sobic001G158900 Sobic009G143500 Sobic009G143500 Sobic010G219900--Sobic009G143500 Sobic003G146500 Sobic003G146500 Sobic010G219900--Sobic003G146500 Sobic008G094000 Sobic008G094000 Sobic010G219900--Sobic008G094000 Sobic005G188600 Sobic005G188600 Sobic010G219900--Sobic005G188600 Sobic001G065600 Sobic001G065600 Sobic010G219900--Sobic001G065600 Sobic004G354200 Sobic004G354200 Sobic010G219900--Sobic004G354200 Sobic005G144300 Sobic005G144300 Sobic010G219900--Sobic005G144300 Sobic010G219900--Sobic003G290800 Sobic001G212100--Sobic009G184900 Sobic001G212100--Sobic009G210000 Sobic002G331100 Sobic002G331100 Sobic001G212100--Sobic002G331100 Sobic003G395600 Sobic003G395600 Sobic001G212100--Sobic003G395600 Sobic001G212100--Sobic003G115000 Sobic010G219600 Sobic010G219600 Sobic001G212100--Sobic010G219600 Sobic001G472666 Sobic001G472666 Sobic001G212100--Sobic001G472666 Sobic001G212100--Sobic005G119001 Sobic001G212100--Sobic005G086250
Octagon: transcription factors


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