Gene annotation
Transcriptome id Sobic.006G211100.1
Synonym Sb06g028190
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YFN2
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF477
NCBI CDD KOG0110; RNA-binding protein (RRM superfamily)
KEGG Orthology K14787; MRD1, multiple RNA-binding domain-containing protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G19610 : nucleotide binding;nucleic acid binding;RNA binding
RAP-DB (Rice) LOC_Os04g52200.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020697 , Zm00025a057006
Brachypodium KQJ84515 , KQJ84516
Barley HORVU2Hr1G099630.5 , HORVU2Hr1G099630.4 , HORVU2Hr1G099630.7 , HORVU2Hr1G099630.6 , HORVU2Hr1G099630.1 , HORVU2Hr1G099630.3 , HORVU2Hr1G099630.2 , HORVU2Hr1G099630.9 , HORVU2Hr1G099630.8
Wheat TraesCS2B02G446000 , TraesCS2D02G423600 , TraesCS2D02G423600 , TraesCS2D02G423600 , TraesCS2D02G423600 , TraesCS2A02G425700 , TraesCS2A02G425700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G211100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G409700 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02350: REV3L, DNA polymerase zeta
2 Sobic.006G138600 DIE2/ALG10 family, putative, expressed K03850: alpha-1,2-glucosyltransferase
3 Sobic.004G319900 expressed protein K05310: PIGG, ethanolamine phosphate transferase 2 subunit G
4 Sobic.005G028600 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.006G279200 expressed protein K11789: DCAF1, DDB1- and CUL4-associated factor 1
6 Sobic.006G013700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
8 Sobic.006G043400 - -
9 Sobic.010G002100 expressed protein K15164: mediator of RNA polymerase II transcription subunit 13
10 Sobic.006G243100 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
11 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
12 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
13 Sobic.004G010151 - -
14 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
15 Sobic.001G439300 AGAP009131-PA, putative, expressed K18826: calmodulin-lysine N-methyltransferase
16 Sobic.009G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
17 Sobic.002G011800 expressed protein -
18 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
19 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
20 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic006G211100 Sobic006G211100 Sobic002G409700 Sobic002G409700 Sobic006G211100--Sobic002G409700 Sobic006G138600 Sobic006G138600 Sobic006G211100--Sobic006G138600 Sobic004G319900 Sobic004G319900 Sobic006G211100--Sobic004G319900 Sobic005G028600 Sobic005G028600 Sobic006G211100--Sobic005G028600 Sobic006G279200 Sobic006G279200 Sobic006G211100--Sobic006G279200 Sobic006G013700 Sobic006G013700 Sobic006G211100--Sobic006G013700 Sobic005G001000 Sobic005G001000 Sobic006G211100--Sobic005G001000 Sobic006G043400 Sobic006G043400 Sobic006G211100--Sobic006G043400 Sobic010G002100 Sobic010G002100 Sobic006G211100--Sobic010G002100 Sobic008G185300 Sobic008G185300 Sobic002G409700--Sobic008G185300 Sobic002G409700--Sobic005G028600 Sobic004G263600 Sobic004G263600 Sobic002G409700--Sobic004G263600 Sobic005G110200 Sobic005G110200 Sobic002G409700--Sobic005G110200 Sobic001G280900 Sobic001G280900 Sobic002G409700--Sobic001G280900 Sobic003G252200 Sobic003G252200 Sobic002G409700--Sobic003G252200 Sobic007G099000 Sobic007G099000 Sobic002G409700--Sobic007G099000 Sobic005G090401 Sobic005G090401 Sobic002G409700--Sobic005G090401 Sobic007G020500 Sobic007G020500 Sobic002G409700--Sobic007G020500 Sobic001G098100 Sobic001G098100 Sobic006G138600--Sobic001G098100 Sobic010G125700 Sobic010G125700 Sobic006G138600--Sobic010G125700 Sobic005G008500 Sobic005G008500 Sobic006G138600--Sobic005G008500 Sobic006G027200 Sobic006G027200 Sobic006G138600--Sobic006G027200 Sobic009G038600 Sobic009G038600 Sobic006G138600--Sobic009G038600 Sobic001G408500 Sobic001G408500 Sobic006G138600--Sobic001G408500 Sobic010G051200 Sobic010G051200 Sobic006G138600--Sobic010G051200 Sobic006G223200 Sobic006G223200 Sobic006G138600--Sobic006G223200 Sobic007G118400 Sobic007G118400 Sobic006G138600--Sobic007G118400 Sobic003G312100 Sobic003G312100 Sobic004G319900--Sobic003G312100 Sobic006G040500 Sobic006G040500 Sobic004G319900--Sobic006G040500 Sobic010G148932 Sobic010G148932 Sobic004G319900--Sobic010G148932 Sobic003G072200 Sobic003G072200 Sobic004G319900--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic004G319900--Sobic002G397500 Sobic008G088872 Sobic008G088872 Sobic004G319900--Sobic008G088872 Sobic007G062800 Sobic007G062800 Sobic004G319900--Sobic007G062800 Sobic003G186000 Sobic003G186000 Sobic004G319900--Sobic003G186000 Sobic004G005100 Sobic004G005100 Sobic004G319900--Sobic004G005100 Sobic001G058700 Sobic001G058700 Sobic005G028600--Sobic001G058700 Sobic003G247300 Sobic003G247300 Sobic005G028600--Sobic003G247300 Sobic005G028600--Sobic002G397500 Sobic001G299700 Sobic001G299700 Sobic005G028600--Sobic001G299700 Sobic003G408600 Sobic003G408600 Sobic005G028600--Sobic003G408600 Sobic005G028600--Sobic005G001000 Sobic005G028600--Sobic001G280900 Sobic005G028600--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic005G028600--Sobic005G008800 Sobic006G279200--Sobic005G028600 Sobic001G037100 Sobic001G037100 Sobic006G279200--Sobic001G037100 Sobic003G229500 Sobic003G229500 Sobic006G279200--Sobic003G229500 Sobic002G430000 Sobic002G430000 Sobic006G279200--Sobic002G430000 Sobic001G117200 Sobic001G117200 Sobic006G279200--Sobic001G117200 Sobic006G279200--Sobic003G247300 Sobic003G246100 Sobic003G246100 Sobic006G279200--Sobic003G246100 Sobic001G050200 Sobic001G050200 Sobic006G279200--Sobic001G050200 Sobic006G279200--Sobic001G058700 Sobic010G123600 Sobic010G123600 Sobic006G013700--Sobic010G123600 Sobic008G044100 Sobic008G044100 Sobic006G013700--Sobic008G044100 Sobic010G010700 Sobic010G010700 Sobic006G013700--Sobic010G010700 Sobic005G167700 Sobic005G167700 Sobic006G013700--Sobic005G167700 Sobic004G276400 Sobic004G276400 Sobic006G013700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic006G013700--Sobic001G194200 Sobic001G433800 Sobic001G433800 Sobic006G013700--Sobic001G433800 Sobic004G134200 Sobic004G134200 Sobic006G013700--Sobic004G134200 Sobic010G126000 Sobic010G126000 Sobic006G013700--Sobic010G126000 Sobic005G001000--Sobic001G194200 Sobic002G008900 Sobic002G008900 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic001G066500 Sobic001G066500 Sobic006G043400--Sobic001G066500 SobicK025800 SobicK025800 Sobic006G043400--SobicK025800 Sobic004G334300 Sobic004G334300 Sobic006G043400--Sobic004G334300 Sobic003G185400 Sobic003G185400 Sobic006G043400--Sobic003G185400 Sobic010G217600 Sobic010G217600 Sobic006G043400--Sobic010G217600 Sobic006G043400--Sobic008G088872 Sobic001G111850 Sobic001G111850 Sobic006G043400--Sobic001G111850 Sobic004G253700 Sobic004G253700 Sobic006G043400--Sobic004G253700 Sobic007G010700 Sobic007G010700 Sobic006G043400--Sobic007G010700 Sobic008G009700 Sobic008G009700 Sobic010G002100--Sobic008G009700 Sobic001G540400 Sobic001G540400 Sobic010G002100--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic010G002100--Sobic005G112300 Sobic010G002100--Sobic002G397500 Sobic010G002100--Sobic005G008800 Sobic010G002100--Sobic007G062800 Sobic002G071500 Sobic002G071500 Sobic010G002100--Sobic002G071500 Sobic002G309600 Sobic002G309600 Sobic010G002100--Sobic002G309600 Sobic004G034900 Sobic004G034900 Sobic010G002100--Sobic004G034900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.