Gene annotation
Transcriptome id Sobic.006G243100.3,Sobic.006G243100.2,Sobic.006G243100.4
Synonym SDN3, Sb06g030900
Functional annotation exonuclease, putative, expressed
UniProt A0A1Z5RFD8 , A0A1Z5RFB3 , A0A1Z5RG22
Pfam PF00929
Panther DB PTHR12801 PTHR12801:SF69
NCBI CDD KOG2248; 3'-5' exonuclease
KEGG Orthology K14570; REX1, REXO1, RNA exonuclease 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67240 : small RNA degrading nuclease 3,small RNA degrading nuclease 1
RAP-DB (Rice) LOC_Os04g55700.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a009511 , Zm00025a050729
Brachypodium PNT62024
Barley HORVU2Hr1G113320.25 , HORVU2Hr1G113320.24 , HORVU2Hr1G113320.27 , HORVU2Hr1G113320.26 , HORVU2Hr1G113320.20 , HORVU2Hr1G113320.23 , HORVU2Hr1G113320.22 , HORVU2Hr1G113320.29 , HORVU2Hr1G113320.28 , HORVU2Hr1G113320.32 , HORVU2Hr1G113320.33 , HORVU2Hr1G113320.30 , HORVU2Hr1G113320.31 , HORVU2Hr1G113320.36 , HORVU2Hr1G113320.34 , HORVU2Hr1G113320.35 , HORVU2Hr1G113320.3 , HORVU2Hr1G113320.1 , HORVU2Hr1G113320.6 , HORVU2Hr1G113320.7 , HORVU2Hr1G113320.4 , HORVU2Hr1G113320.5 , HORVU2Hr1G113320.8 , HORVU2Hr1G113320.10 , HORVU2Hr1G113320.16 , HORVU2Hr1G113320.17 , HORVU2Hr1G113320.9 , HORVU2Hr1G113320.11 , HORVU2Hr1G113320.12 , HORVU2Hr1G113320.13 , HORVU2Hr1G113320.14 , HORVU2Hr1G113320.15 , HORVU2Hr1G113320.18
Wheat TraesCS2B02G538900 , TraesCS2D02G512200 , TraesCS2A02G510900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
2 Sobic.002G409700 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed K02350: REV3L, DNA polymerase zeta
3 Sobic.003G434800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.006G211100 RNA recognition motif containing protein, putative, expressed K14787: MRD1, multiple RNA-binding domain-containing protein 1
5 Sobic.004G355300 para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor, putative, expressed K06125: 4-hydroxybenzoate polyprenyltransferase
6 Sobic.004G356000 expressed protein K19022: AP-5 complex subunit beta-1
7 Sobic.003G059400 HEAT repeat family protein, putative, expressed K14550: UTP10, U3 small nucleolar RNA-associated protein 10
8 Sobic.001G535100 WD domain, G-beta repeat domain containing protein, expressed -
9 Sobic.002G413600 ulp1 protease family protein, putative, expressed K08592: sentrin-specific protease 1
10 Sobic.009G079500 Leucine Rich Repeat family protein, expressed -
11 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
12 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
13 Sobic.K025800 - -
14 Sobic.006G043400 - -
15 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
16 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
17 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
18 Sobic.009G184800 ribosomal protein L11 methyltransferase-related, putative, expressed -
19 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
20 Sobic.004G319900 expressed protein K05310: PIGG, ethanolamine phosphate transferase 2 subunit G


Gene co-expression network
sample Sobic006G243100 Sobic006G243100 Sobic007G056200 Sobic007G056200 Sobic006G243100--Sobic007G056200 Sobic002G409700 Sobic002G409700 Sobic006G243100--Sobic002G409700 Sobic003G434800 Sobic003G434800 Sobic006G243100--Sobic003G434800 Sobic006G211100 Sobic006G211100 Sobic006G243100--Sobic006G211100 Sobic004G355300 Sobic004G355300 Sobic006G243100--Sobic004G355300 Sobic004G356000 Sobic004G356000 Sobic006G243100--Sobic004G356000 Sobic003G059400 Sobic003G059400 Sobic006G243100--Sobic003G059400 Sobic001G535100 Sobic001G535100 Sobic006G243100--Sobic001G535100 Sobic002G413600 Sobic002G413600 Sobic006G243100--Sobic002G413600 Sobic002G071400 Sobic002G071400 Sobic007G056200--Sobic002G071400 Sobic003G199300 Sobic003G199300 Sobic007G056200--Sobic003G199300 Sobic006G128400 Sobic006G128400 Sobic007G056200--Sobic006G128400 Sobic006G221600 Sobic006G221600 Sobic007G056200--Sobic006G221600 Sobic010G003400 Sobic010G003400 Sobic007G056200--Sobic010G003400 Sobic007G056200--Sobic003G059400 Sobic008G049100 Sobic008G049100 Sobic007G056200--Sobic008G049100 Sobic009G217200 Sobic009G217200 Sobic007G056200--Sobic009G217200 Sobic001G110600 Sobic001G110600 Sobic007G056200--Sobic001G110600 Sobic008G185300 Sobic008G185300 Sobic002G409700--Sobic008G185300 Sobic005G028600 Sobic005G028600 Sobic002G409700--Sobic005G028600 Sobic004G263600 Sobic004G263600 Sobic002G409700--Sobic004G263600 Sobic005G110200 Sobic005G110200 Sobic002G409700--Sobic005G110200 Sobic001G280900 Sobic001G280900 Sobic002G409700--Sobic001G280900 Sobic003G252200 Sobic003G252200 Sobic002G409700--Sobic003G252200 Sobic007G099000 Sobic007G099000 Sobic002G409700--Sobic007G099000 Sobic005G090401 Sobic005G090401 Sobic002G409700--Sobic005G090401 Sobic007G020500 Sobic007G020500 Sobic002G409700--Sobic007G020500 Sobic003G290800 Sobic003G290800 Sobic003G434800--Sobic003G290800 Sobic003G434800--Sobic002G413600 Sobic010G110400 Sobic010G110400 Sobic003G434800--Sobic010G110400 Sobic002G118200 Sobic002G118200 Sobic003G434800--Sobic002G118200 Sobic003G203300 Sobic003G203300 Sobic003G434800--Sobic003G203300 Sobic007G192600 Sobic007G192600 Sobic003G434800--Sobic007G192600 Sobic005G118400 Sobic005G118400 Sobic003G434800--Sobic005G118400 Sobic001G219700 Sobic001G219700 Sobic003G434800--Sobic001G219700 Sobic003G379400 Sobic003G379400 Sobic003G434800--Sobic003G379400 Sobic006G211100--Sobic002G409700 Sobic006G138600 Sobic006G138600 Sobic006G211100--Sobic006G138600 Sobic004G319900 Sobic004G319900 Sobic006G211100--Sobic004G319900 Sobic006G211100--Sobic005G028600 Sobic006G279200 Sobic006G279200 Sobic006G211100--Sobic006G279200 Sobic006G013700 Sobic006G013700 Sobic006G211100--Sobic006G013700 Sobic005G001000 Sobic005G001000 Sobic006G211100--Sobic005G001000 Sobic006G043400 Sobic006G043400 Sobic006G211100--Sobic006G043400 Sobic010G002100 Sobic010G002100 Sobic006G211100--Sobic010G002100 Sobic001G064300 Sobic001G064300 Sobic004G355300--Sobic001G064300 Sobic006G265300 Sobic006G265300 Sobic004G355300--Sobic006G265300 Sobic009G184800 Sobic009G184800 Sobic004G355300--Sobic009G184800 Sobic010G125800 Sobic010G125800 Sobic004G355300--Sobic010G125800 Sobic004G355300--Sobic006G138600 Sobic004G355300--Sobic006G243100 Sobic007G118400 Sobic007G118400 Sobic004G355300--Sobic007G118400 Sobic010G279100 Sobic010G279100 Sobic004G355300--Sobic010G279100 Sobic001G167800 Sobic001G167800 Sobic004G355300--Sobic001G167800 Sobic006G111800 Sobic006G111800 Sobic004G356000--Sobic006G111800 Sobic004G010200 Sobic004G010200 Sobic004G356000--Sobic004G010200 Sobic005G020000 Sobic005G020000 Sobic004G356000--Sobic005G020000 Sobic003G334200 Sobic003G334200 Sobic004G356000--Sobic003G334200 Sobic009G184600 Sobic009G184600 Sobic004G356000--Sobic009G184600 Sobic004G356000--Sobic007G056200 Sobic001G283300 Sobic001G283300 Sobic004G356000--Sobic001G283300 Sobic006G178100 Sobic006G178100 Sobic004G356000--Sobic006G178100 Sobic002G372500 Sobic002G372500 Sobic004G356000--Sobic002G372500 Sobic003G260400 Sobic003G260400 Sobic003G059400--Sobic003G260400 Sobic001G191700 Sobic001G191700 Sobic003G059400--Sobic001G191700 Sobic003G059400--Sobic010G003400 Sobic004G019200 Sobic004G019200 Sobic003G059400--Sobic004G019200 Sobic004G030800 Sobic004G030800 Sobic003G059400--Sobic004G030800 Sobic010G053600 Sobic010G053600 Sobic003G059400--Sobic010G053600 Sobic010G079500 Sobic010G079500 Sobic003G059400--Sobic010G079500 Sobic001G004400 Sobic001G004400 Sobic003G059400--Sobic001G004400 Sobic004G085000 Sobic004G085000 Sobic003G059400--Sobic004G085000 Sobic007G155700 Sobic007G155700 Sobic001G535100--Sobic007G155700 Sobic009G201200 Sobic009G201200 Sobic001G535100--Sobic009G201200 Sobic006G247900 Sobic006G247900 Sobic001G535100--Sobic006G247900 Sobic001G092200 Sobic001G092200 Sobic001G535100--Sobic001G092200 Sobic001G466200 Sobic001G466200 Sobic001G535100--Sobic001G466200 Sobic001G535100--Sobic006G243100 Sobic001G214800 Sobic001G214800 Sobic001G535100--Sobic001G214800 Sobic002G234300 Sobic002G234300 Sobic001G535100--Sobic002G234300 Sobic001G535100--Sobic009G217200 Sobic002G413600--Sobic003G434800 Sobic004G178500 Sobic004G178500 Sobic002G413600--Sobic004G178500 Sobic001G060500 Sobic001G060500 Sobic002G413600--Sobic001G060500 Sobic002G339300 Sobic002G339300 Sobic002G413600--Sobic002G339300 Sobic003G193200 Sobic003G193200 Sobic002G413600--Sobic003G193200 Sobic002G173100 Sobic002G173100 Sobic002G413600--Sobic002G173100 Sobic001G081200 Sobic001G081200 Sobic002G413600--Sobic001G081200 Sobic003G190000 Sobic003G190000 Sobic002G413600--Sobic003G190000 Sobic002G413600--Sobic003G290800
Octagon: transcription factors


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