Gene annotation
Transcriptome id Sobic.001G535100.2,Sobic.001G535100.1
Synonym Sb01g049790
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5SBW0 , C5X139
Pfam -
Panther DB PTHR14344
NCBI CDD KOG0974; WD-repeat protein WDR6, WD repeat superfamily
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01860 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g02110.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053535 , Zm00025a020443
Brachypodium PNT78337 , PNT78336 , PNT78339 , PNT78338 , KQK24040
Barley HORVU4Hr1G089350.3 , HORVU4Hr1G089350.5 , HORVU4Hr1G089350.7 , HORVU4Hr1G089350.6 , HORVU4Hr1G089350.8 , HORVU4Hr1G089350.1 , HORVU4Hr1G089350.2 , HORVU4Hr1G089350.4
Wheat TraesCS5A02G539500 , TraesCSU02G031700 , TraesCSU02G031700 , TraesCS5A02G556800 , TraesCSU02G032000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G155700 - K14810: DDX56, ATP-dependent RNA helicase DDX56/DBP9
2 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
3 Sobic.006G247900 phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
4 Sobic.001G092200 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
5 Sobic.001G466200 expressed protein -
6 Sobic.006G243100 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
7 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
8 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
9 Sobic.009G217200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K02999: RPA1, DNA-directed RNA polymerase I subunit RPA1
10 Sobic.004G241700 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
12 Sobic.K025800 - -
13 Sobic.010G061100 DUF292 domain containing protein, expressed -
14 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
15 Sobic.003G185400 - -
16 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
17 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
18 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
19 Sobic.003G144300 expressed protein -
20 Sobic.008G060500 receptor-like protein kinase 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G535100 Sobic001G535100 Sobic007G155700 Sobic007G155700 Sobic001G535100--Sobic007G155700 Sobic009G201200 Sobic009G201200 Sobic001G535100--Sobic009G201200 Sobic006G247900 Sobic006G247900 Sobic001G535100--Sobic006G247900 Sobic001G092200 Sobic001G092200 Sobic001G535100--Sobic001G092200 Sobic001G466200 Sobic001G466200 Sobic001G535100--Sobic001G466200 Sobic006G243100 Sobic006G243100 Sobic001G535100--Sobic006G243100 Sobic001G214800 Sobic001G214800 Sobic001G535100--Sobic001G214800 Sobic002G234300 Sobic002G234300 Sobic001G535100--Sobic002G234300 Sobic009G217200 Sobic009G217200 Sobic001G535100--Sobic009G217200 Sobic004G157400 Sobic004G157400 Sobic007G155700--Sobic004G157400 Sobic007G155700--Sobic001G214800 Sobic004G320500 Sobic004G320500 Sobic007G155700--Sobic004G320500 Sobic007G217100 Sobic007G217100 Sobic007G155700--Sobic007G217100 Sobic007G155700--Sobic002G234300 Sobic001G206500 Sobic001G206500 Sobic007G155700--Sobic001G206500 Sobic006G034500 Sobic006G034500 Sobic007G155700--Sobic006G034500 Sobic004G256000 Sobic004G256000 Sobic007G155700--Sobic004G256000 Sobic003G036400 Sobic003G036400 Sobic007G155700--Sobic003G036400 Sobic010G050400 Sobic010G050400 Sobic009G201200--Sobic010G050400 Sobic006G125700 Sobic006G125700 Sobic009G201200--Sobic006G125700 Sobic010G205900 Sobic010G205900 Sobic009G201200--Sobic010G205900 Sobic009G201200--Sobic004G157400 Sobic008G049100 Sobic008G049100 Sobic009G201200--Sobic008G049100 Sobic009G201200--Sobic002G234300 Sobic003G199300 Sobic003G199300 Sobic009G201200--Sobic003G199300 Sobic003G123200 Sobic003G123200 Sobic009G201200--Sobic003G123200 Sobic002G071400 Sobic002G071400 Sobic009G201200--Sobic002G071400 Sobic004G135400 Sobic004G135400 Sobic006G247900--Sobic004G135400 Sobic003G014500 Sobic003G014500 Sobic006G247900--Sobic003G014500 Sobic008G167800 Sobic008G167800 Sobic006G247900--Sobic008G167800 Sobic001G110600 Sobic001G110600 Sobic006G247900--Sobic001G110600 SobicK025800 SobicK025800 Sobic006G247900--SobicK025800 Sobic006G086600 Sobic006G086600 Sobic006G247900--Sobic006G086600 Sobic003G279900 Sobic003G279900 Sobic006G247900--Sobic003G279900 Sobic001G447300 Sobic001G447300 Sobic006G247900--Sobic001G447300 Sobic010G205200 Sobic010G205200 Sobic006G247900--Sobic010G205200 Sobic001G374000 Sobic001G374000 Sobic001G092200--Sobic001G374000 Sobic001G125500 Sobic001G125500 Sobic001G092200--Sobic001G125500 Sobic010G254900 Sobic010G254900 Sobic001G092200--Sobic010G254900 Sobic010G080550 Sobic010G080550 Sobic001G092200--Sobic010G080550 Sobic001G373800 Sobic001G373800 Sobic001G092200--Sobic001G373800 Sobic002G363800 Sobic002G363800 Sobic001G092200--Sobic002G363800 Sobic006G106300 Sobic006G106300 Sobic001G092200--Sobic006G106300 Sobic005G076301 Sobic005G076301 Sobic001G092200--Sobic005G076301 Sobic003G143800 Sobic003G143800 Sobic001G092200--Sobic003G143800 Sobic001G466200--Sobic005G076301 Sobic007G016000 Sobic007G016000 Sobic001G466200--Sobic007G016000 Sobic001G465200 Sobic001G465200 Sobic001G466200--Sobic001G465200 Sobic005G130001 Sobic005G130001 Sobic001G466200--Sobic005G130001 Sobic001G021700 Sobic001G021700 Sobic001G466200--Sobic001G021700 Sobic005G017100 Sobic005G017100 Sobic001G466200--Sobic005G017100 Sobic003G283750 Sobic003G283750 Sobic001G466200--Sobic003G283750 Sobic002G078850 Sobic002G078850 Sobic001G466200--Sobic002G078850 Sobic001G316700 Sobic001G316700 Sobic001G466200--Sobic001G316700 Sobic007G056200 Sobic007G056200 Sobic006G243100--Sobic007G056200 Sobic002G409700 Sobic002G409700 Sobic006G243100--Sobic002G409700 Sobic003G434800 Sobic003G434800 Sobic006G243100--Sobic003G434800 Sobic006G211100 Sobic006G211100 Sobic006G243100--Sobic006G211100 Sobic004G355300 Sobic004G355300 Sobic006G243100--Sobic004G355300 Sobic004G356000 Sobic004G356000 Sobic006G243100--Sobic004G356000 Sobic003G059400 Sobic003G059400 Sobic006G243100--Sobic003G059400 Sobic006G243100--Sobic001G535100 Sobic002G413600 Sobic002G413600 Sobic006G243100--Sobic002G413600 Sobic002G068100 Sobic002G068100 Sobic001G214800--Sobic002G068100 Sobic003G019000 Sobic003G019000 Sobic001G214800--Sobic003G019000 Sobic001G536400 Sobic001G536400 Sobic001G214800--Sobic001G536400 Sobic001G354600 Sobic001G354600 Sobic001G214800--Sobic001G354600 Sobic010G121500 Sobic010G121500 Sobic001G214800--Sobic010G121500 Sobic002G344000 Sobic002G344000 Sobic001G214800--Sobic002G344000 Sobic001G375300 Sobic001G375300 Sobic001G214800--Sobic001G375300 Sobic001G152100 Sobic001G152100 Sobic001G214800--Sobic001G152100 Sobic004G351600 Sobic004G351600 Sobic001G214800--Sobic004G351600 Sobic002G234300--Sobic002G071400 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic002G234300--Sobic001G110600 Sobic002G234300--Sobic009G217200 Sobic001G453400 Sobic001G453400 Sobic002G234300--Sobic001G453400 Sobic010G003400 Sobic010G003400 Sobic002G234300--Sobic010G003400 Sobic009G246500 Sobic009G246500 Sobic002G234300--Sobic009G246500 Sobic002G234300--Sobic003G199300 Sobic003G156500 Sobic003G156500 Sobic009G217200--Sobic003G156500 Sobic006G221600 Sobic006G221600 Sobic009G217200--Sobic006G221600 Sobic009G217200--Sobic010G003400 Sobic009G217200--Sobic001G453400 Sobic009G217200--Sobic002G234300 Sobic009G217200--Sobic008G049100 Sobic009G217200--Sobic009G246500 Sobic009G217200--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic009G217200--Sobic010G114900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.