Gene annotation
Transcriptome id Sobic.001G092200.1,Sobic.001G092200.4,Sobic.001G092200.2,Sobic.001G092200.3
Synonym EDA15, Sb01g008310, ATSUV3
Functional annotation -
UniProt A0A1B6QI19 , A0A1B6QI25 , A0A1Z5S505 , A0A1Z5S4Y4
Pfam PF00271 PF12513
Panther DB PTHR12131 PTHR12131:SF2
NCBI CDD -
KEGG Orthology K17675; SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
Gene Ontology GO:0016817; hydrolase activity, acting on acid anhydrides


Orthologs (automatic annotation)
TAIR AT4G14790 : ATP-dependent RNA helicase, mitochondrial (SUV3)
RAP-DB (Rice) LOC_Os03g53500.1 : helicase conserved C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008127
Brachypodium KQK13243 , PNT74145
Barley -
Wheat TraesCS5D02G394100 , TraesCS5B02G389300 , TraesCS5A02G384500
Populus -


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cDNA sequences
Sobic.001G092200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G374000 cation efflux family protein, putative, expressed -
2 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
3 Sobic.010G254900 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14321: NUPL2, NUP42, nucleoporin-like protein 2
4 Sobic.010G080550 - -
5 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
6 Sobic.002G363800 expressed protein -
7 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
8 Sobic.005G076301 - -
9 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
10 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
12 Sobic.006G178100 coiled-coil domain-containing protein 139, putative, expressed K07583: tRNA pseudouridine synthase 10
13 Sobic.001G308400 expressed protein -
14 Sobic.005G024400 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
16 Sobic.009G201200 WD domain, G-beta repeat domain containing protein, expressed K14558: PWP2, periodic tryptophan protein 2
17 Sobic.001G214800 - K12824: TCERG1, transcription elongation regulator 1
18 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.002G241600 - -
20 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G092200 Sobic001G092200 Sobic001G374000 Sobic001G374000 Sobic001G092200--Sobic001G374000 Sobic001G125500 Sobic001G125500 Sobic001G092200--Sobic001G125500 Sobic010G254900 Sobic010G254900 Sobic001G092200--Sobic010G254900 Sobic010G080550 Sobic010G080550 Sobic001G092200--Sobic010G080550 Sobic001G373800 Sobic001G373800 Sobic001G092200--Sobic001G373800 Sobic002G363800 Sobic002G363800 Sobic001G092200--Sobic002G363800 Sobic006G106300 Sobic006G106300 Sobic001G092200--Sobic006G106300 Sobic005G076301 Sobic005G076301 Sobic001G092200--Sobic005G076301 Sobic003G143800 Sobic003G143800 Sobic001G092200--Sobic003G143800 Sobic001G445500 Sobic001G445500 Sobic001G374000--Sobic001G445500 Sobic010G171000 Sobic010G171000 Sobic001G374000--Sobic010G171000 Sobic001G356100 Sobic001G356100 Sobic001G374000--Sobic001G356100 Sobic010G160300 Sobic010G160300 Sobic001G374000--Sobic010G160300 Sobic009G040250 Sobic009G040250 Sobic001G374000--Sobic009G040250 Sobic001G399700 Sobic001G399700 Sobic001G374000--Sobic001G399700 Sobic001G114200 Sobic001G114200 Sobic001G374000--Sobic001G114200 Sobic002G304700 Sobic002G304700 Sobic001G374000--Sobic002G304700 Sobic006G232800 Sobic006G232800 Sobic001G374000--Sobic006G232800 Sobic003G230600 Sobic003G230600 Sobic001G125500--Sobic003G230600 Sobic001G125500--Sobic002G363800 Sobic009G128500 Sobic009G128500 Sobic001G125500--Sobic009G128500 Sobic003G256800 Sobic003G256800 Sobic001G125500--Sobic003G256800 Sobic001G308400 Sobic001G308400 Sobic001G125500--Sobic001G308400 Sobic006G245900 Sobic006G245900 Sobic001G125500--Sobic006G245900 Sobic002G381900 Sobic002G381900 Sobic001G125500--Sobic002G381900 Sobic002G241600 Sobic002G241600 Sobic001G125500--Sobic002G241600 Sobic002G296400 Sobic002G296400 Sobic001G125500--Sobic002G296400 Sobic003G212900 Sobic003G212900 Sobic010G254900--Sobic003G212900 Sobic002G422100 Sobic002G422100 Sobic010G254900--Sobic002G422100 Sobic006G281700 Sobic006G281700 Sobic010G254900--Sobic006G281700 Sobic007G218000 Sobic007G218000 Sobic010G254900--Sobic007G218000 Sobic010G254900--Sobic001G308400 Sobic003G180900 Sobic003G180900 Sobic010G254900--Sobic003G180900 Sobic010G204400 Sobic010G204400 Sobic010G254900--Sobic010G204400 Sobic001G091400 Sobic001G091400 Sobic010G254900--Sobic001G091400 Sobic001G452000 Sobic001G452000 Sobic010G254900--Sobic001G452000 Sobic009G098300 Sobic009G098300 Sobic010G080550--Sobic009G098300 Sobic002G127200 Sobic002G127200 Sobic010G080550--Sobic002G127200 Sobic001G014300 Sobic001G014300 Sobic010G080550--Sobic001G014300 Sobic005G108000 Sobic005G108000 Sobic010G080550--Sobic005G108000 Sobic004G149700 Sobic004G149700 Sobic010G080550--Sobic004G149700 Sobic006G216200 Sobic006G216200 Sobic010G080550--Sobic006G216200 Sobic004G223300 Sobic004G223300 Sobic010G080550--Sobic004G223300 Sobic001G245000 Sobic001G245000 Sobic010G080550--Sobic001G245000 Sobic006G154100 Sobic006G154100 Sobic010G080550--Sobic006G154100 Sobic002G371600 Sobic002G371600 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic006G033101 Sobic006G033101 Sobic001G373800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic001G373800--Sobic004G038100 Sobic006G029100 Sobic006G029100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic001G373800--Sobic001G373000 Sobic001G451300 Sobic001G451300 Sobic001G373800--Sobic001G451300 Sobic009G104900 Sobic009G104900 Sobic001G373800--Sobic009G104900 Sobic002G363800--Sobic002G296400 Sobic002G363800--Sobic002G371600 Sobic002G363800--Sobic001G125500 Sobic001G097900 Sobic001G097900 Sobic002G363800--Sobic001G097900 Sobic002G363800--Sobic003G256800 Sobic008G092800 Sobic008G092800 Sobic002G363800--Sobic008G092800 Sobic007G145400 Sobic007G145400 Sobic002G363800--Sobic007G145400 Sobic001G340000 Sobic001G340000 Sobic002G363800--Sobic001G340000 Sobic002G363800--Sobic003G230600 Sobic003G409900 Sobic003G409900 Sobic006G106300--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic006G106300--Sobic003G021600 Sobic002G398700 Sobic002G398700 Sobic006G106300--Sobic002G398700 Sobic006G106300--Sobic001G097900 Sobic001G015400 Sobic001G015400 Sobic006G106300--Sobic001G015400 Sobic009G254100 Sobic009G254100 Sobic006G106300--Sobic009G254100 Sobic002G301100 Sobic002G301100 Sobic006G106300--Sobic002G301100 Sobic001G474400 Sobic001G474400 Sobic006G106300--Sobic001G474400 Sobic002G364900 Sobic002G364900 Sobic006G106300--Sobic002G364900 Sobic004G043200 Sobic004G043200 Sobic005G076301--Sobic004G043200 Sobic007G016000 Sobic007G016000 Sobic005G076301--Sobic007G016000 Sobic001G056100 Sobic001G056100 Sobic005G076301--Sobic001G056100 Sobic010G128900 Sobic010G128900 Sobic005G076301--Sobic010G128900 Sobic004G109500 Sobic004G109500 Sobic005G076301--Sobic004G109500 Sobic005G076650 Sobic005G076650 Sobic005G076301--Sobic005G076650 Sobic004G180600 Sobic004G180600 Sobic005G076301--Sobic004G180600 Sobic001G262500 Sobic001G262500 Sobic005G076301--Sobic001G262500 Sobic005G076301--Sobic001G092200 Sobic008G124800 Sobic008G124800 Sobic003G143800--Sobic008G124800 Sobic006G021700 Sobic006G021700 Sobic003G143800--Sobic006G021700 Sobic003G143800--Sobic001G015400 Sobic007G155500 Sobic007G155500 Sobic003G143800--Sobic007G155500 Sobic003G143800--Sobic008G092800 Sobic002G340900 Sobic002G340900 Sobic003G143800--Sobic002G340900 Sobic004G141800 Sobic004G141800 Sobic003G143800--Sobic004G141800 Sobic005G114500 Sobic005G114500 Sobic003G143800--Sobic005G114500 Sobic003G405500 Sobic003G405500 Sobic003G143800--Sobic003G405500
Octagon: transcription factors


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