Gene annotation
Transcriptome id Sobic.006G013700.2,Sobic.006G013700.1
Synonym SUVH1, Sb06g001340
Functional annotation histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
UniProt C5YC42
Pfam PF05033 PF00856 PF02182
Panther DB PTHR22884 PTHR22884:SF360
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology K11420; [histone H3]-lysine9 N-trimethyltransferase EHMT
Gene Ontology GO:0018024; histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G73100 : SU(VAR)3-9 homolog 3
RAP-DB (Rice) LOC_Os11g38900.1 : histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
MaizeGDB (Corn) Zm00025a045420
Brachypodium KQK20326
Barley HORVU4Hr1G074120.10 , HORVU4Hr1G074120.8 , HORVU4Hr1G074120.9 , HORVU4Hr1G074120.6 , HORVU4Hr1G074120.7 , HORVU4Hr1G074120.4 , HORVU4Hr1G074120.5 , HORVU4Hr1G074120.2 , HORVU4Hr1G074120.3 , HORVU4Hr1G074120.1
Wheat TraesCS3A02G385200 , TraesCS4B02G280000
Populus -


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cDNA sequences
Sobic.006G013700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G123600 WW domain containing protein, expressed -
2 Sobic.008G044100 expressed protein -
3 Sobic.010G010700 PHD-finger family protein, expressed -
4 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
5 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
8 Sobic.004G134200 GTP binding protein, putative, expressed -
9 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
10 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
11 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
12 Sobic.003G168100 BZIP protein, putative, expressed -
13 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
14 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
15 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
16 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
17 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G170900 - -
19 Sobic.009G256300 DNA binding protein, putative, expressed -
20 Sobic.002G316600 expressed protein -


Gene co-expression network
sample Sobic006G013700 Sobic006G013700 Sobic010G123600 Sobic010G123600 Sobic006G013700--Sobic010G123600 Sobic008G044100 Sobic008G044100 Sobic006G013700--Sobic008G044100 Sobic010G010700 Sobic010G010700 Sobic006G013700--Sobic010G010700 Sobic005G167700 Sobic005G167700 Sobic006G013700--Sobic005G167700 Sobic004G276400 Sobic004G276400 Sobic006G013700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic006G013700--Sobic001G194200 Sobic001G433800 Sobic001G433800 Sobic006G013700--Sobic001G433800 Sobic004G134200 Sobic004G134200 Sobic006G013700--Sobic004G134200 Sobic010G126000 Sobic010G126000 Sobic006G013700--Sobic010G126000 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic010G123600--Sobic005G167700 Sobic005G112300 Sobic005G112300 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic010G123600--Sobic008G001200 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic001G151100 Sobic001G151100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic005G167700--Sobic010G126000 Sobic003G360400 Sobic003G360400 Sobic005G167700--Sobic003G360400 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic004G134200--Sobic008G044100 Sobic004G134200--Sobic001G374100 Sobic004G134200--Sobic009G256300 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic004G134200--Sobic001G194200 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic010G126000--Sobic003G168100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic006G096900 Sobic006G096900 Sobic010G126000--Sobic006G096900 Sobic003G398700 Sobic003G398700 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic007G136800 Sobic007G136800 Sobic010G126000--Sobic007G136800
Octagon: transcription factors


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