Gene annotation
Transcriptome id Sobic.001G113500.1,Sobic.001G113500.2,Sobic.001G113500.3
Synonym Sb01g010090
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt C5WN06
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF54
NCBI CDD KOG1609; Protein involved in mRNA turnover and stability
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G11020 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os08g29590.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a007888
Brachypodium KQJ98094 , KQJ98095 , KQJ98096
Barley HORVU7Hr1G063520.1 , HORVU7Hr1G063520.3 , HORVU7Hr1G063520.2 , HORVU7Hr1G063520.4
Wheat TraesCS7B02G176700 , TraesCS7D02G282300 , TraesCS7A02G283700 , TraesCS7A02G283700 , TraesCS7A02G283700
Populus -


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cDNA sequences
Sobic.001G113500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
2 Sobic.010G278200 expressed protein -
3 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
4 Sobic.009G222500 expressed protein -
5 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
6 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
7 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
8 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
9 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.002G263600 expressed protein -
11 Sobic.006G115600 expressed protein -
12 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.010G074300 smr domain containing protein, expressed -
14 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
16 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
17 Sobic.003G316500 expressed protein -
18 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
19 Sobic.005G126600 OsFBL55 - F-box domain and LRR containing protein, expressed -
20 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic001G113500 Sobic001G113500 Sobic003G139800 Sobic003G139800 Sobic001G113500--Sobic003G139800 Sobic010G278200 Sobic010G278200 Sobic001G113500--Sobic010G278200 Sobic004G202500 Sobic004G202500 Sobic001G113500--Sobic004G202500 Sobic009G222500 Sobic009G222500 Sobic001G113500--Sobic009G222500 Sobic010G147100 Sobic010G147100 Sobic001G113500--Sobic010G147100 Sobic004G066200 Sobic004G066200 Sobic001G113500--Sobic004G066200 Sobic003G099100 Sobic003G099100 Sobic001G113500--Sobic003G099100 Sobic010G131900 Sobic010G131900 Sobic001G113500--Sobic010G131900 Sobic002G045600 Sobic002G045600 Sobic001G113500--Sobic002G045600 Sobic001G390800 Sobic001G390800 Sobic003G139800--Sobic001G390800 Sobic010G229400 Sobic010G229400 Sobic003G139800--Sobic010G229400 Sobic001G268200 Sobic001G268200 Sobic003G139800--Sobic001G268200 Sobic003G139800--Sobic010G147100 Sobic002G311100 Sobic002G311100 Sobic003G139800--Sobic002G311100 Sobic003G139800--Sobic001G113500 Sobic010G139600 Sobic010G139600 Sobic003G139800--Sobic010G139600 Sobic002G111000 Sobic002G111000 Sobic003G139800--Sobic002G111000 Sobic003G139800--Sobic010G131900 Sobic010G278200--Sobic010G147100 Sobic009G138100 Sobic009G138100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic004G202500--Sobic004G066200 Sobic004G202500--Sobic010G278200 Sobic004G202500--Sobic003G099100 Sobic004G202500--Sobic008G124900 Sobic001G193300 Sobic001G193300 Sobic004G202500--Sobic001G193300 Sobic006G101700 Sobic006G101700 Sobic004G202500--Sobic006G101700 Sobic001G007000 Sobic001G007000 Sobic004G202500--Sobic001G007000 Sobic007G093800 Sobic007G093800 Sobic004G202500--Sobic007G093800 Sobic004G202500--Sobic010G130000 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic006G049700 Sobic006G049700 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic003G264200 Sobic003G264200 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic010G147100--Sobic003G316500 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic010G147100--Sobic003G118200 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic009G123600 Sobic009G123600 Sobic003G099100--Sobic009G123600 Sobic002G385900 Sobic002G385900 Sobic003G099100--Sobic002G385900 Sobic003G099100--Sobic004G202500 Sobic003G099100--Sobic009G222500 Sobic003G099100--Sobic010G027600 Sobic009G135600 Sobic009G135600 Sobic003G099100--Sobic009G135600 Sobic003G099100--Sobic006G049700 Sobic003G099100--Sobic010G278200 Sobic004G115350 Sobic004G115350 Sobic003G099100--Sobic004G115350 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic010G131900--Sobic002G311100 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G131900--Sobic010G147100 Sobic003G365300 Sobic003G365300 Sobic010G131900--Sobic003G365300 Sobic009G068500 Sobic009G068500 Sobic010G131900--Sobic009G068500 Sobic003G264100 Sobic003G264100 Sobic010G131900--Sobic003G264100 Sobic001G203900 Sobic001G203900 Sobic010G131900--Sobic001G203900 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic009G044800 Sobic009G044800 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500
Octagon: transcription factors


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