Gene annotation
Transcriptome id Sobic.001G133300.2,Sobic.001G133300.1,Sobic.001G133300.3
Synonym
Functional annotation LTPL90 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed
UniProt A0A1B6QIT2 , A0A1Z5S5U0 , A0A1B6QIS1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g43050.1 : LTPL90 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G289800 HMG1/2, putative, expressed -
2 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
3 Sobic.002G227900 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.010G222100 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.009G033800 IF, putative, expressed -
6 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.001G289900 AT hook motif domain containing protein, expressed -
8 Sobic.009G087700 proline-rich family protein, putative, expressed -
9 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.001G393200 expressed protein -
11 Sobic.007G154500 F-box protein, putative, expressed -
12 Sobic.003G302400 expressed protein -
13 Sobic.003G230000 serine/threonine-protein kinase, putative, expressed -
14 Sobic.002G353200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsBZR1(Ortholog in rice:Zhu et al. (2015))(PubMedID : 31659861)@BES1/BZR1 homolog protein, putative, expressed K14503: brassinosteroid resistant 1/2
15 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
16 Sobic.010G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.002G394500 proline-rich family protein, putative, expressed -
18 Sobic.009G157600 DUF740 domain containing protein, expressed -
19 Sobic.006G219500 remorin family protein, putative, expressed -
20 Sobic.003G354232 - -


Gene co-expression network
sample Sobic001G133300 Sobic001G133300 Sobic002G289800 Sobic002G289800 Sobic001G133300--Sobic002G289800 Sobic005G129700 Sobic005G129700 Sobic001G133300--Sobic005G129700 Sobic002G227900 Sobic002G227900 Sobic001G133300--Sobic002G227900 Sobic010G222100 Sobic010G222100 Sobic001G133300--Sobic010G222100 Sobic009G033800 Sobic009G033800 Sobic001G133300--Sobic009G033800 Sobic001G496400 Sobic001G496400 Sobic001G133300--Sobic001G496400 Sobic001G289900 Sobic001G289900 Sobic001G133300--Sobic001G289900 Sobic009G087700 Sobic009G087700 Sobic001G133300--Sobic009G087700 Sobic007G017700 Sobic007G017700 Sobic001G133300--Sobic007G017700 Sobic002G289800--Sobic001G289900 Sobic002G289800--Sobic007G017700 Sobic003G316601 Sobic003G316601 Sobic002G289800--Sobic003G316601 Sobic004G237000 Sobic004G237000 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic005G129700--Sobic009G033800 Sobic001G255600 Sobic001G255600 Sobic005G129700--Sobic001G255600 Sobic010G227200 Sobic010G227200 Sobic005G129700--Sobic010G227200 Sobic005G129700--Sobic001G289900 Sobic006G102900 Sobic006G102900 Sobic005G129700--Sobic006G102900 Sobic005G129700--Sobic010G222100 Sobic010G191000 Sobic010G191000 Sobic005G129700--Sobic010G191000 Sobic005G129700--Sobic001G133300 Sobic004G331200 Sobic004G331200 Sobic005G129700--Sobic004G331200 Sobic003G230000 Sobic003G230000 Sobic002G227900--Sobic003G230000 Sobic002G394500 Sobic002G394500 Sobic002G227900--Sobic002G394500 Sobic001G473500 Sobic001G473500 Sobic002G227900--Sobic001G473500 Sobic004G313200 Sobic004G313200 Sobic002G227900--Sobic004G313200 Sobic001G393200 Sobic001G393200 Sobic002G227900--Sobic001G393200 Sobic007G180200 Sobic007G180200 Sobic002G227900--Sobic007G180200 Sobic006G219500 Sobic006G219500 Sobic002G227900--Sobic006G219500 Sobic001G155700 Sobic001G155700 Sobic002G227900--Sobic001G155700 Sobic003G307200 Sobic003G307200 Sobic002G227900--Sobic003G307200 Sobic010G222100--Sobic002G289800 Sobic010G222100--Sobic009G033800 Sobic002G353200 Sobic002G353200 Sobic010G222100--Sobic002G353200 Sobic010G215800 Sobic010G215800 Sobic010G222100--Sobic010G215800 Sobic010G222100--Sobic001G289900 Sobic001G505000 Sobic001G505000 Sobic010G222100--Sobic001G505000 Sobic010G222100--Sobic005G129700 Sobic010G222100--Sobic007G132900 Sobic003G279100 Sobic003G279100 Sobic010G222100--Sobic003G279100 Sobic009G033800--Sobic005G129700 Sobic009G033800--Sobic010G222100 Sobic009G033800--Sobic001G289900 Sobic007G154500 Sobic007G154500 Sobic009G033800--Sobic007G154500 Sobic009G033800--Sobic006G102900 Sobic009G033800--Sobic004G331200 Sobic009G033800--Sobic002G289800 Sobic003G107200 Sobic003G107200 Sobic009G033800--Sobic003G107200 Sobic002G426800 Sobic002G426800 Sobic009G033800--Sobic002G426800 Sobic006G221800 Sobic006G221800 Sobic001G496400--Sobic006G221800 Sobic007G209200 Sobic007G209200 Sobic001G496400--Sobic007G209200 Sobic008G114900 Sobic008G114900 Sobic001G496400--Sobic008G114900 Sobic001G496400--Sobic006G219500 Sobic004G003700 Sobic004G003700 Sobic001G496400--Sobic004G003700 Sobic008G125700 Sobic008G125700 Sobic001G496400--Sobic008G125700 Sobic006G124400 Sobic006G124400 Sobic001G496400--Sobic006G124400 Sobic010G119300 Sobic010G119300 Sobic001G496400--Sobic010G119300 Sobic001G101700 Sobic001G101700 Sobic001G496400--Sobic001G101700 Sobic010G105400 Sobic010G105400 Sobic001G289900--Sobic010G105400 Sobic001G289900--Sobic002G289800 Sobic001G289900--Sobic007G132900 Sobic003G387700 Sobic003G387700 Sobic001G289900--Sobic003G387700 Sobic004G047100 Sobic004G047100 Sobic001G289900--Sobic004G047100 Sobic001G398400 Sobic001G398400 Sobic001G289900--Sobic001G398400 Sobic004G273000 Sobic004G273000 Sobic001G289900--Sobic004G273000 Sobic001G091500 Sobic001G091500 Sobic001G289900--Sobic001G091500 Sobic001G289900--Sobic002G426800 Sobic009G087700--Sobic006G221800 Sobic009G087700--Sobic004G003700 Sobic001G101900 Sobic001G101900 Sobic009G087700--Sobic001G101900 Sobic007G147200 Sobic007G147200 Sobic009G087700--Sobic007G147200 Sobic009G087700--Sobic008G125700 Sobic009G087700--Sobic001G101700 Sobic002G360500 Sobic002G360500 Sobic009G087700--Sobic002G360500 Sobic009G087700--Sobic001G496400 Sobic009G087700--Sobic001G393200 Sobic007G017700--Sobic003G387700 Sobic007G017700--Sobic002G289800 Sobic007G207700 Sobic007G207700 Sobic007G017700--Sobic007G207700 Sobic010G202100 Sobic010G202100 Sobic007G017700--Sobic010G202100 Sobic006G134200 Sobic006G134200 Sobic007G017700--Sobic006G134200 Sobic010G215300 Sobic010G215300 Sobic007G017700--Sobic010G215300 Sobic007G017700--Sobic001G091500 Sobic010G234800 Sobic010G234800 Sobic007G017700--Sobic010G234800 Sobic008G114500 Sobic008G114500 Sobic007G017700--Sobic008G114500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.