Gene annotation
Transcriptome id Sobic.001G143200.1
Synonym Sb01g012470
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transmembrane protein 56, putative, expressed
UniProt C5WQB5
Pfam PF03798
Panther DB PTHR13439 PTHR13439:SF17
NCBI CDD KOG4561; Uncharacterized conserved protein, contains TBC domain
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G31300 : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
RAP-DB (Rice) LOC_Os03g46410.1 : transmembrane protein 56, putative, expressed
MaizeGDB (Corn) Zm00025a017156
Brachypodium PNT72933 , PNT72932 , PNT72931 , KQK09940 , KQK09939 , KQK13852 , KQK13853 , KQK13851
Barley HORVU4Hr1G002990.2 , HORVU4Hr1G002990.3 , HORVU4Hr1G002990.1 , HORVU4Hr1G002990.6 , HORVU4Hr1G002990.7 , HORVU4Hr1G002990.4 , HORVU4Hr1G002990.5 , HORVU4Hr1G002990.8 , HORVU4Hr1G002990.9 , HORVU4Hr1G002990.10 , HORVU4Hr1G002990.11 , HORVU4Hr1G002990.12 , HORVU4Hr1G002990.13 , HORVU4Hr1G002990.14
Wheat TraesCS4B02G019000 , TraesCS4D02G017400 , TraesCS4A02G294500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G024100 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
2 Sobic.002G042400 FAD-linked oxidoreductase protein, putative, expressed K00102: LDHD, D-lactate dehydrogenase (cytochrome)
3 Sobic.007G070000 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
4 Sobic.002G217600 E2F-related protein, putative, expressed -
5 Sobic.002G162500 - -
6 Sobic.006G054300 amidohydrolase family protein, expressed -
7 Sobic.001G344400 3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
8 Sobic.002G148900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
9 Sobic.007G089500 syntaxin 6, N-terminal domain containing protein, expressed -
10 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
11 Sobic.002G276600 endoglucanase, putative, expressed -
12 Sobic.002G340200 expressed protein -
13 Sobic.006G063001 - -
14 Sobic.001G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
15 Sobic.007G001900 harpin-induced protein 1 domain containing protein, expressed -
16 Sobic.002G424900 MAG2, putative, expressed -
17 Sobic.010G078300 leaf senescence related protein, putative, expressed -
18 Sobic.001G371700 zinc finger protein, putative, expressed -
19 Sobic.003G153400 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.008G088842 - -


Gene co-expression network
sample Sobic001G143200 Sobic001G143200 Sobic009G024100 Sobic009G024100 Sobic001G143200--Sobic009G024100 Sobic002G042400 Sobic002G042400 Sobic001G143200--Sobic002G042400 Sobic007G070000 Sobic007G070000 Sobic001G143200--Sobic007G070000 Sobic002G217600 Sobic002G217600 Sobic001G143200--Sobic002G217600 Sobic002G162500 Sobic002G162500 Sobic001G143200--Sobic002G162500 Sobic006G054300 Sobic006G054300 Sobic001G143200--Sobic006G054300 Sobic001G344400 Sobic001G344400 Sobic001G143200--Sobic001G344400 Sobic002G148900 Sobic002G148900 Sobic001G143200--Sobic002G148900 Sobic007G089500 Sobic007G089500 Sobic001G143200--Sobic007G089500 Sobic002G311000 Sobic002G311000 Sobic009G024100--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic009G024100--Sobic002G142500 Sobic003G078300 Sobic003G078300 Sobic009G024100--Sobic003G078300 Sobic003G197100 Sobic003G197100 Sobic009G024100--Sobic003G197100 Sobic002G362700 Sobic002G362700 Sobic009G024100--Sobic002G362700 Sobic009G024100--Sobic001G143200 Sobic002G246000 Sobic002G246000 Sobic009G024100--Sobic002G246000 Sobic002G045200 Sobic002G045200 Sobic009G024100--Sobic002G045200 Sobic007G000700 Sobic007G000700 Sobic009G024100--Sobic007G000700 Sobic002G042400--Sobic002G217600 Sobic002G072300 Sobic002G072300 Sobic002G042400--Sobic002G072300 Sobic001G462200 Sobic001G462200 Sobic002G042400--Sobic001G462200 Sobic002G301200 Sobic002G301200 Sobic002G042400--Sobic002G301200 Sobic001G415700 Sobic001G415700 Sobic002G042400--Sobic001G415700 Sobic001G116500 Sobic001G116500 Sobic002G042400--Sobic001G116500 Sobic010G112800 Sobic010G112800 Sobic002G042400--Sobic010G112800 Sobic010G202300 Sobic010G202300 Sobic002G042400--Sobic010G202300 Sobic002G291400 Sobic002G291400 Sobic002G042400--Sobic002G291400 Sobic003G311600 Sobic003G311600 Sobic007G070000--Sobic003G311600 Sobic002G340200 Sobic002G340200 Sobic007G070000--Sobic002G340200 Sobic010G134500 Sobic010G134500 Sobic007G070000--Sobic010G134500 Sobic008G088842 Sobic008G088842 Sobic007G070000--Sobic008G088842 Sobic003G223000 Sobic003G223000 Sobic007G070000--Sobic003G223000 Sobic001G300900 Sobic001G300900 Sobic007G070000--Sobic001G300900 Sobic010G091200 Sobic010G091200 Sobic007G070000--Sobic010G091200 Sobic004G354000 Sobic004G354000 Sobic007G070000--Sobic004G354000 Sobic006G275000 Sobic006G275000 Sobic007G070000--Sobic006G275000 Sobic005G117300 Sobic005G117300 Sobic002G217600--Sobic005G117300 Sobic006G091300 Sobic006G091300 Sobic002G217600--Sobic006G091300 Sobic004G301200 Sobic004G301200 Sobic002G217600--Sobic004G301200 Sobic002G304100 Sobic002G304100 Sobic002G217600--Sobic002G304100 Sobic010G204900 Sobic010G204900 Sobic002G217600--Sobic010G204900 Sobic002G217600--Sobic010G202300 Sobic003G267500 Sobic003G267500 Sobic002G217600--Sobic003G267500 Sobic003G162900 Sobic003G162900 Sobic002G217600--Sobic003G162900 Sobic003G265500 Sobic003G265500 Sobic002G217600--Sobic003G265500 Sobic001G258900 Sobic001G258900 Sobic002G162500--Sobic001G258900 Sobic002G162500--Sobic001G300900 Sobic003G341700 Sobic003G341700 Sobic002G162500--Sobic003G341700 Sobic002G162500--Sobic008G088842 Sobic002G162500--Sobic002G340200 Sobic004G135900 Sobic004G135900 Sobic002G162500--Sobic004G135900 Sobic010G172000 Sobic010G172000 Sobic002G162500--Sobic010G172000 Sobic009G107080 Sobic009G107080 Sobic002G162500--Sobic009G107080 Sobic006G063001 Sobic006G063001 Sobic002G162500--Sobic006G063001 Sobic005G116100 Sobic005G116100 Sobic006G054300--Sobic005G116100 Sobic008G078400 Sobic008G078400 Sobic006G054300--Sobic008G078400 Sobic009G030900 Sobic009G030900 Sobic006G054300--Sobic009G030900 Sobic004G343900 Sobic004G343900 Sobic006G054300--Sobic004G343900 Sobic007G143700 Sobic007G143700 Sobic006G054300--Sobic007G143700 Sobic002G274200 Sobic002G274200 Sobic006G054300--Sobic002G274200 Sobic001G104800 Sobic001G104800 Sobic006G054300--Sobic001G104800 Sobic005G123200 Sobic005G123200 Sobic006G054300--Sobic005G123200 Sobic003G157400 Sobic003G157400 Sobic006G054300--Sobic003G157400 Sobic002G329400 Sobic002G329400 Sobic001G344400--Sobic002G329400 Sobic006G090400 Sobic006G090400 Sobic001G344400--Sobic006G090400 Sobic007G005850 Sobic007G005850 Sobic001G344400--Sobic007G005850 Sobic005G202600 Sobic005G202600 Sobic001G344400--Sobic005G202600 Sobic010G030800 Sobic010G030800 Sobic001G344400--Sobic010G030800 Sobic004G018150 Sobic004G018150 Sobic001G344400--Sobic004G018150 Sobic009G222200 Sobic009G222200 Sobic001G344400--Sobic009G222200 Sobic001G361700 Sobic001G361700 Sobic001G344400--Sobic001G361700 Sobic003G199800 Sobic003G199800 Sobic001G344400--Sobic003G199800 Sobic005G017000 Sobic005G017000 Sobic002G148900--Sobic005G017000 Sobic008G174966 Sobic008G174966 Sobic002G148900--Sobic008G174966 Sobic005G031000 Sobic005G031000 Sobic002G148900--Sobic005G031000 Sobic007G001900 Sobic007G001900 Sobic002G148900--Sobic007G001900 Sobic002G148900--Sobic002G042400 Sobic005G064100 Sobic005G064100 Sobic002G148900--Sobic005G064100 Sobic002G148900--Sobic002G072300 Sobic009G061000 Sobic009G061000 Sobic002G148900--Sobic009G061000 Sobic002G264300 Sobic002G264300 Sobic002G148900--Sobic002G264300 Sobic010G188600 Sobic010G188600 Sobic007G089500--Sobic010G188600 Sobic006G261700 Sobic006G261700 Sobic007G089500--Sobic006G261700 Sobic005G073200 Sobic005G073200 Sobic007G089500--Sobic005G073200 Sobic009G063100 Sobic009G063100 Sobic007G089500--Sobic009G063100 Sobic002G148100 Sobic002G148100 Sobic007G089500--Sobic002G148100 Sobic001G514800 Sobic001G514800 Sobic007G089500--Sobic001G514800 Sobic001G085600 Sobic001G085600 Sobic007G089500--Sobic001G085600 Sobic009G210200 Sobic009G210200 Sobic007G089500--Sobic009G210200 Sobic002G218500 Sobic002G218500 Sobic007G089500--Sobic002G218500
Octagon: transcription factors


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