Gene annotation
Transcriptome id Sobic.007G089500.1
Synonym Sb07g007780
Functional annotation syntaxin 6, N-terminal domain containing protein, expressed
UniProt C5YJI4
Pfam PF09177
Panther DB PTHR19957 PTHR19957:SF94
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT4G30240 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os08g14640.1 : syntaxin 6, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054997
Brachypodium KQJ95773 , PNT66963
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G089500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G188600 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
2 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
3 Sobic.005G073200 DUF803 domain containing, putative, expressed -
4 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
5 Sobic.002G148100 CRAL/TRIO domain containing protein, expressed -
6 Sobic.001G514800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
7 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.009G210200 Acid phosphatase/vanadium-dependent haloperoxidase-related protein(PubMedID : 26465154)@Divergent PAP2 family domain containing protein, expressed -
9 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
10 Sobic.004G355700 C2 domain containing protein, putative, expressed -
11 Sobic.002G393700 expressed protein -
12 Sobic.004G312800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine phosphatase family protein, putative, expressed K18045: SIW14, tyrosine-protein phosphatase SIW14
13 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
14 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
15 Sobic.009G140300 MLO domain containing protein, putative, expressed K08472: mlo protein
16 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
17 Sobic.001G020100 expressed protein -
18 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.009G168600 low photochemical bleaching 1 protein, putative, expressed -
20 Sobic.005G084800 expressed protein -


Gene co-expression network
sample Sobic007G089500 Sobic007G089500 Sobic010G188600 Sobic010G188600 Sobic007G089500--Sobic010G188600 Sobic006G261700 Sobic006G261700 Sobic007G089500--Sobic006G261700 Sobic005G073200 Sobic005G073200 Sobic007G089500--Sobic005G073200 Sobic009G063100 Sobic009G063100 Sobic007G089500--Sobic009G063100 Sobic002G148100 Sobic002G148100 Sobic007G089500--Sobic002G148100 Sobic001G514800 Sobic001G514800 Sobic007G089500--Sobic001G514800 Sobic001G085600 Sobic001G085600 Sobic007G089500--Sobic001G085600 Sobic009G210200 Sobic009G210200 Sobic007G089500--Sobic009G210200 Sobic002G218500 Sobic002G218500 Sobic007G089500--Sobic002G218500 Sobic010G188600--Sobic009G063100 Sobic007G029700 Sobic007G029700 Sobic010G188600--Sobic007G029700 Sobic002G193800 Sobic002G193800 Sobic010G188600--Sobic002G193800 Sobic004G193700 Sobic004G193700 Sobic010G188600--Sobic004G193700 Sobic002G091600 Sobic002G091600 Sobic010G188600--Sobic002G091600 Sobic006G092000 Sobic006G092000 Sobic010G188600--Sobic006G092000 Sobic005G149400 Sobic005G149400 Sobic010G188600--Sobic005G149400 Sobic008G115900 Sobic008G115900 Sobic010G188600--Sobic008G115900 Sobic001G168250 Sobic001G168250 Sobic010G188600--Sobic001G168250 Sobic002G279700 Sobic002G279700 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic008G171300 Sobic008G171300 Sobic006G261700--Sobic008G171300 Sobic001G020100 Sobic001G020100 Sobic006G261700--Sobic001G020100 Sobic004G307400 Sobic004G307400 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic004G343900 Sobic004G343900 Sobic006G261700--Sobic004G343900 Sobic008G188600 Sobic008G188600 Sobic006G261700--Sobic008G188600 Sobic001G254600 Sobic001G254600 Sobic006G261700--Sobic001G254600 Sobic008G006200 Sobic008G006200 Sobic005G073200--Sobic008G006200 Sobic003G409700 Sobic003G409700 Sobic005G073200--Sobic003G409700 Sobic001G244600 Sobic001G244600 Sobic005G073200--Sobic001G244600 Sobic005G073200--Sobic009G140300 Sobic004G202200 Sobic004G202200 Sobic005G073200--Sobic004G202200 Sobic003G306200 Sobic003G306200 Sobic005G073200--Sobic003G306200 Sobic002G275300 Sobic002G275300 Sobic005G073200--Sobic002G275300 Sobic002G220900 Sobic002G220900 Sobic005G073200--Sobic002G220900 Sobic001G491000 Sobic001G491000 Sobic005G073200--Sobic001G491000 Sobic010G023700 Sobic010G023700 Sobic009G063100--Sobic010G023700 Sobic007G140800 Sobic007G140800 Sobic009G063100--Sobic007G140800 Sobic001G129000 Sobic001G129000 Sobic009G063100--Sobic001G129000 Sobic009G063100--Sobic010G188600 Sobic004G274100 Sobic004G274100 Sobic009G063100--Sobic004G274100 Sobic006G207800 Sobic006G207800 Sobic009G063100--Sobic006G207800 Sobic009G063100--Sobic007G029700 Sobic001G102800 Sobic001G102800 Sobic009G063100--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic009G063100--Sobic009G237100 Sobic006G280500 Sobic006G280500 Sobic002G148100--Sobic006G280500 Sobic002G148100--Sobic010G188600 Sobic003G186900 Sobic003G186900 Sobic002G148100--Sobic003G186900 Sobic002G148100--Sobic007G089500 Sobic001G193300 Sobic001G193300 Sobic002G148100--Sobic001G193300 Sobic003G253600 Sobic003G253600 Sobic002G148100--Sobic003G253600 Sobic008G187100 Sobic008G187100 Sobic002G148100--Sobic008G187100 Sobic002G383800 Sobic002G383800 Sobic002G148100--Sobic002G383800 Sobic003G113800 Sobic003G113800 Sobic002G148100--Sobic003G113800 Sobic001G017300 Sobic001G017300 Sobic001G514800--Sobic001G017300 Sobic001G239500 Sobic001G239500 Sobic001G514800--Sobic001G239500 Sobic002G172700 Sobic002G172700 Sobic001G514800--Sobic002G172700 Sobic009G054900 Sobic009G054900 Sobic001G514800--Sobic009G054900 Sobic001G514800--Sobic001G020100 Sobic004G035900 Sobic004G035900 Sobic001G514800--Sobic004G035900 Sobic006G130300 Sobic006G130300 Sobic001G514800--Sobic006G130300 Sobic004G356400 Sobic004G356400 Sobic001G514800--Sobic004G356400 Sobic007G136200 Sobic007G136200 Sobic001G514800--Sobic007G136200 Sobic005G100600 Sobic005G100600 Sobic001G085600--Sobic005G100600 Sobic001G085600--Sobic004G193700 Sobic001G261545 Sobic001G261545 Sobic001G085600--Sobic001G261545 Sobic001G085600--Sobic006G092000 Sobic002G309900 Sobic002G309900 Sobic001G085600--Sobic002G309900 Sobic001G203400 Sobic001G203400 Sobic001G085600--Sobic001G203400 Sobic001G085600--Sobic002G218500 Sobic005G198000 Sobic005G198000 Sobic001G085600--Sobic005G198000 Sobic003G319800 Sobic003G319800 Sobic001G085600--Sobic003G319800 Sobic008G064500 Sobic008G064500 Sobic009G210200--Sobic008G064500 Sobic004G303200 Sobic004G303200 Sobic009G210200--Sobic004G303200 Sobic004G020300 Sobic004G020300 Sobic009G210200--Sobic004G020300 Sobic006G067400 Sobic006G067400 Sobic009G210200--Sobic006G067400 Sobic010G160700 Sobic010G160700 Sobic009G210200--Sobic010G160700 Sobic009G210200--Sobic008G171300 Sobic002G233700 Sobic002G233700 Sobic009G210200--Sobic002G233700 Sobic006G235350 Sobic006G235350 Sobic009G210200--Sobic006G235350 Sobic002G272100 Sobic002G272100 Sobic009G210200--Sobic002G272100 Sobic006G128300 Sobic006G128300 Sobic002G218500--Sobic006G128300 Sobic006G031800 Sobic006G031800 Sobic002G218500--Sobic006G031800 Sobic006G038500 Sobic006G038500 Sobic002G218500--Sobic006G038500 Sobic001G043800 Sobic001G043800 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic002G218500--Sobic007G029700 Sobic001G516901 Sobic001G516901 Sobic002G218500--Sobic001G516901 Sobic004G079800 Sobic004G079800 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800
Octagon: transcription factors


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