Gene annotation
Transcriptome id Sobic.001G162500.1,Sobic.001G162500.2,Sobic.001G162500.7,Sobic.001G162500.5,Sobic.001G162500.11,Sobic.001G162500.10,Sobic.001G162500.6,Sobic.001G162500.4,Sobic.001G162500.9,Sobic.001G162500.12,Sobic.001G162500.8,Sobic.001G162500.14,Sobic.001G162500.13,Sobic.001G162500.3
Synonym DAR1, Sb01g014220
Functional annotation LIM domain-containing protein, putative, expressed
UniProt A0A1Z5S5W2 , A0A1Z5S5X0 , A0A1Z5S5X5 , A0A1B6QJ84
Pfam PF02809 PF00412 PF12315
Panther DB PTHR24209 PTHR24209:SF12
NCBI CDD KOG1703; Adaptor protein Enigma and related PDZ-LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G36860 : LIM domain-containing protein
RAP-DB (Rice) LOC_Os03g42820.1,LOC_Os03g42820.2 : LIM domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004553 , Zm00025a007370
Brachypodium KQK14109 , KQK14110 , KQK14111
Barley HORVU4Hr1G011730.18 , HORVU4Hr1G011730.19 , HORVU4Hr1G011730.10 , HORVU4Hr1G011730.11 , HORVU4Hr1G011730.12 , HORVU4Hr1G011730.13 , HORVU4Hr1G011730.14 , HORVU4Hr1G011730.15 , HORVU4Hr1G011730.16 , HORVU4Hr1G011730.17 , HORVU4Hr1G011730.8 , HORVU4Hr1G011730.9 , HORVU4Hr1G011730.2 , HORVU4Hr1G011730.3 , HORVU4Hr1G011730.1 , HORVU4Hr1G011730.6 , HORVU4Hr1G011730.7 , HORVU4Hr1G011730.4 , HORVU4Hr1G011730.5 , HORVU4Hr1G011730.29 , HORVU4Hr1G011730.28 , HORVU4Hr1G011730.32 , HORVU4Hr1G011730.33 , HORVU4Hr1G011730.30 , HORVU4Hr1G011730.31 , HORVU4Hr1G011730.34 , HORVU4Hr1G011730.35 , HORVU4Hr1G011730.25 , HORVU4Hr1G011730.24 , HORVU4Hr1G011730.27 , HORVU4Hr1G011730.26 , HORVU4Hr1G011730.21 , HORVU4Hr1G011730.20 , HORVU4Hr1G011730.23 , HORVU4Hr1G011730.22
Wheat TraesCS4A02G245200 , TraesCS4A02G245200 , TraesCS4B02G070200 , TraesCS4B02G070200 , TraesCS4D02G069000
Populus PNT36467 , PNT36469 , PNT36468 , PNT36472 , PNT36473 , PNT36470 , PNT36471 , PNT36476 , PNT36474 , PNT36475


JBrowse

Open New Page


cDNA sequences
Sobic.001G162500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
2 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
3 Sobic.006G247900 phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
4 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
5 Sobic.001G381200 vacuolar-sorting receptor precursor, putative, expressed -
6 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
7 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
8 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
9 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
10 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
12 Sobic.003G014500 "MHZ7(Ortholog in rice:Ma et al., 2013)"(PubMedID : 31659865)@ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
13 Sobic.007G098200 - -
14 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
15 Sobic.003G006300 expressed protein -
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.001G159600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
18 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
19 Sobic.008G179900 cysteine synthase, putative, expressed K01738: cysteine synthase
20 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic001G162500 Sobic001G162500 Sobic003G109100 Sobic003G109100 Sobic001G162500--Sobic003G109100 Sobic010G138000 Sobic010G138000 Sobic001G162500--Sobic010G138000 Sobic006G247900 Sobic006G247900 Sobic001G162500--Sobic006G247900 Sobic010G228400 Sobic010G228400 Sobic001G162500--Sobic010G228400 Sobic001G381200 Sobic001G381200 Sobic001G162500--Sobic001G381200 Sobic008G004600 Sobic008G004600 Sobic001G162500--Sobic008G004600 Sobic003G195000 Sobic003G195000 Sobic001G162500--Sobic003G195000 Sobic009G094300 Sobic009G094300 Sobic001G162500--Sobic009G094300 Sobic005G003300 Sobic005G003300 Sobic001G162500--Sobic005G003300 Sobic004G052900 Sobic004G052900 Sobic003G109100--Sobic004G052900 Sobic007G024700 Sobic007G024700 Sobic003G109100--Sobic007G024700 Sobic001G270400 Sobic001G270400 Sobic003G109100--Sobic001G270400 Sobic003G100800 Sobic003G100800 Sobic003G109100--Sobic003G100800 Sobic003G109100--Sobic009G094300 Sobic006G245400 Sobic006G245400 Sobic003G109100--Sobic006G245400 Sobic001G137100 Sobic001G137100 Sobic003G109100--Sobic001G137100 Sobic002G340100 Sobic002G340100 Sobic003G109100--Sobic002G340100 Sobic010G205800 Sobic010G205800 Sobic003G109100--Sobic010G205800 Sobic010G175400 Sobic010G175400 Sobic010G138000--Sobic010G175400 Sobic001G194200 Sobic001G194200 Sobic010G138000--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic010G138000--Sobic007G103100 Sobic004G136300 Sobic004G136300 Sobic010G138000--Sobic004G136300 Sobic002G276100 Sobic002G276100 Sobic010G138000--Sobic002G276100 Sobic001G002000 Sobic001G002000 Sobic010G138000--Sobic001G002000 Sobic004G291900 Sobic004G291900 Sobic010G138000--Sobic004G291900 Sobic001G268200 Sobic001G268200 Sobic010G138000--Sobic001G268200 Sobic002G275700 Sobic002G275700 Sobic010G138000--Sobic002G275700 Sobic004G135400 Sobic004G135400 Sobic006G247900--Sobic004G135400 Sobic003G014500 Sobic003G014500 Sobic006G247900--Sobic003G014500 Sobic008G167800 Sobic008G167800 Sobic006G247900--Sobic008G167800 Sobic001G110600 Sobic001G110600 Sobic006G247900--Sobic001G110600 SobicK025800 SobicK025800 Sobic006G247900--SobicK025800 Sobic006G086600 Sobic006G086600 Sobic006G247900--Sobic006G086600 Sobic003G279900 Sobic003G279900 Sobic006G247900--Sobic003G279900 Sobic001G447300 Sobic001G447300 Sobic006G247900--Sobic001G447300 Sobic010G205200 Sobic010G205200 Sobic006G247900--Sobic010G205200 Sobic001G107600 Sobic001G107600 Sobic010G228400--Sobic001G107600 Sobic010G228400--Sobic001G137100 Sobic003G365300 Sobic003G365300 Sobic010G228400--Sobic003G365300 Sobic001G390800 Sobic001G390800 Sobic010G228400--Sobic001G390800 Sobic002G130800 Sobic002G130800 Sobic010G228400--Sobic002G130800 Sobic010G228400--Sobic001G268200 Sobic001G007000 Sobic001G007000 Sobic010G228400--Sobic001G007000 Sobic010G147100 Sobic010G147100 Sobic010G228400--Sobic010G147100 Sobic008G089100 Sobic008G089100 Sobic010G228400--Sobic008G089100 Sobic003G229300 Sobic003G229300 Sobic001G381200--Sobic003G229300 Sobic010G196500 Sobic010G196500 Sobic001G381200--Sobic010G196500 Sobic003G343500 Sobic003G343500 Sobic001G381200--Sobic003G343500 Sobic002G193100 Sobic002G193100 Sobic001G381200--Sobic002G193100 Sobic001G500800 Sobic001G500800 Sobic001G381200--Sobic001G500800 Sobic003G086900 Sobic003G086900 Sobic001G381200--Sobic003G086900 Sobic004G169000 Sobic004G169000 Sobic001G381200--Sobic004G169000 Sobic001G476700 Sobic001G476700 Sobic001G381200--Sobic001G476700 Sobic004G118200 Sobic004G118200 Sobic001G381200--Sobic004G118200 Sobic006G126100 Sobic006G126100 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic008G004600--Sobic004G135400 Sobic008G004600--Sobic005G003300 Sobic008G004600--Sobic010G205800 Sobic006G208500 Sobic006G208500 Sobic008G004600--Sobic006G208500 Sobic004G039600 Sobic004G039600 Sobic008G004600--Sobic004G039600 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic009G094300--Sobic007G024700 Sobic004G113400 Sobic004G113400 Sobic009G094300--Sobic004G113400 Sobic002G270500 Sobic002G270500 Sobic009G094300--Sobic002G270500 Sobic004G329400 Sobic004G329400 Sobic009G094300--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic009G094300--Sobic001G270400 Sobic001G248300 Sobic001G248300 Sobic009G094300--Sobic001G248300 Sobic001G207400 Sobic001G207400 Sobic009G094300--Sobic001G207400 Sobic001G534800 Sobic001G534800 Sobic005G003300--Sobic001G534800 Sobic005G026200 Sobic005G026200 Sobic005G003300--Sobic005G026200 Sobic005G003300--Sobic004G135400 Sobic004G004300 Sobic004G004300 Sobic005G003300--Sobic004G004300 Sobic005G003300--Sobic008G004600 Sobic005G003300--Sobic006G126100 Sobic008G003700 Sobic008G003700 Sobic005G003300--Sobic008G003700 Sobic008G099800 Sobic008G099800 Sobic005G003300--Sobic008G099800 Sobic005G003300--Sobic004G039600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.