Gene annotation
Transcriptome id Sobic.001G205700.1
Synonym Sb01g018180
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
hydrolase, alpha/beta fold family domain containing protein, expressed
UniProt C5WXA4
Pfam PF00561
Panther DB PTHR10992 PTHR10992:SF869
NCBI CDD KOG4178; Soluble epoxide hydrolase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51000 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os10g35520.1 : hydrolase, alpha/beta fold family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017500 , Zm00025a016385 , Zm00025a016384 , Zm00025a006456
Brachypodium KQJ87583
Barley HORVU2Hr1G116180.5 , HORVU2Hr1G116180.4 , HORVU2Hr1G116180.3 , HORVU2Hr1G116180.2 , HORVU2Hr1G116250.5 , HORVU2Hr1G116250.4 , HORVU2Hr1G116250.1 , HORVU2Hr1G116250.2
Wheat TraesCS2A02G526600 , TraesCS1D02G168400 , TraesCS1B02G186600 , TraesCS1A02G170700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G078500 - -
2 Sobic.008G027200 rp1, putative, expressed -
3 Sobic.002G373100 strictosidine synthase, putative, expressed -
4 Sobic.005G049475 - -
5 Sobic.003G022600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
6 Sobic.003G080800 expressed protein -
7 Sobic.006G060601 - -
8 Sobic.002G118101 - -
9 Sobic.001G451700 cytochrome P450 protein, putative, expressed -
10 Sobic.002G273700 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
11 Sobic.005G045200 homeobox domain containing protein, expressed -
12 Sobic.003G314500 expressed protein -
13 Sobic.007G084300 kelch repeat protein, putative, expressed -
14 Sobic.003G308700 BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
15 Sobic.003G413500 expressed protein -
16 Sobic.003G261900 expressed protein -
17 Sobic.006G143000 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
18 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
19 Sobic.007G157100 gibberellin receptor GID1L2, putative, expressed -
20 Sobic.003G366100 expressed protein -


Gene co-expression network
sample Sobic001G205700 Sobic001G205700 Sobic010G078500 Sobic010G078500 Sobic001G205700--Sobic010G078500 Sobic008G027200 Sobic008G027200 Sobic001G205700--Sobic008G027200 Sobic002G373100 Sobic002G373100 Sobic001G205700--Sobic002G373100 Sobic005G049475 Sobic005G049475 Sobic001G205700--Sobic005G049475 Sobic003G022600 Sobic003G022600 Sobic001G205700--Sobic003G022600 Sobic003G080800 Sobic003G080800 Sobic001G205700--Sobic003G080800 Sobic006G060601 Sobic006G060601 Sobic001G205700--Sobic006G060601 Sobic002G118101 Sobic002G118101 Sobic001G205700--Sobic002G118101 Sobic001G451700 Sobic001G451700 Sobic001G205700--Sobic001G451700 Sobic010G078500--Sobic005G049475 Sobic008G085350 Sobic008G085350 Sobic010G078500--Sobic008G085350 Sobic003G366100 Sobic003G366100 Sobic010G078500--Sobic003G366100 Sobic005G045200 Sobic005G045200 Sobic010G078500--Sobic005G045200 Sobic004G122100 Sobic004G122100 Sobic010G078500--Sobic004G122100 Sobic003G378301 Sobic003G378301 Sobic010G078500--Sobic003G378301 SobicK044407 SobicK044407 Sobic010G078500--SobicK044407 Sobic003G310200 Sobic003G310200 Sobic010G078500--Sobic003G310200 Sobic007G025900 Sobic007G025900 Sobic010G078500--Sobic007G025900 Sobic008G027200--Sobic002G373100 Sobic007G084300 Sobic007G084300 Sobic008G027200--Sobic007G084300 Sobic002G072100 Sobic002G072100 Sobic008G027200--Sobic002G072100 Sobic008G027200--Sobic003G080800 Sobic008G027200--Sobic002G118101 Sobic008G027200--Sobic005G045200 Sobic008G027200--Sobic006G060601 Sobic001G053200 Sobic001G053200 Sobic008G027200--Sobic001G053200 Sobic001G275500 Sobic001G275500 Sobic008G027200--Sobic001G275500 Sobic002G373100--Sobic007G084300 Sobic002G373100--Sobic008G027200 Sobic006G143000 Sobic006G143000 Sobic002G373100--Sobic006G143000 Sobic003G086900 Sobic003G086900 Sobic002G373100--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic002G373100--Sobic010G196500 Sobic006G213500 Sobic006G213500 Sobic002G373100--Sobic006G213500 Sobic002G273700 Sobic002G273700 Sobic002G373100--Sobic002G273700 Sobic009G082000 Sobic009G082000 Sobic002G373100--Sobic009G082000 Sobic003G308700 Sobic003G308700 Sobic002G373100--Sobic003G308700 Sobic005G049475--Sobic010G078500 Sobic004G220600 Sobic004G220600 Sobic005G049475--Sobic004G220600 Sobic006G168000 Sobic006G168000 Sobic005G049475--Sobic006G168000 Sobic005G049475--Sobic008G085350 Sobic003G138400 Sobic003G138400 Sobic005G049475--Sobic003G138400 Sobic010G273700 Sobic010G273700 Sobic005G049475--Sobic010G273700 Sobic003G423200 Sobic003G423200 Sobic005G049475--Sobic003G423200 Sobic005G049475--Sobic003G378301 Sobic005G049475--Sobic003G366100 Sobic007G135000 Sobic007G135000 Sobic003G022600--Sobic007G135000 Sobic003G010300 Sobic003G010300 Sobic003G022600--Sobic003G010300 Sobic003G097100 Sobic003G097100 Sobic003G022600--Sobic003G097100 Sobic001G469500 Sobic001G469500 Sobic003G022600--Sobic001G469500 Sobic006G242000 Sobic006G242000 Sobic003G022600--Sobic006G242000 Sobic003G039700 Sobic003G039700 Sobic003G022600--Sobic003G039700 Sobic007G157100 Sobic007G157100 Sobic003G022600--Sobic007G157100 Sobic009G016600 Sobic009G016600 Sobic003G022600--Sobic009G016600 Sobic010G137300 Sobic010G137300 Sobic003G022600--Sobic010G137300 Sobic003G080700 Sobic003G080700 Sobic003G080800--Sobic003G080700 Sobic010G205700 Sobic010G205700 Sobic003G080800--Sobic010G205700 Sobic003G014300 Sobic003G014300 Sobic003G080800--Sobic003G014300 Sobic008G065200 Sobic008G065200 Sobic003G080800--Sobic008G065200 Sobic005G175500 Sobic005G175500 Sobic003G080800--Sobic005G175500 Sobic001G413000 Sobic001G413000 Sobic003G080800--Sobic001G413000 Sobic003G080800--Sobic006G060601 Sobic009G019100 Sobic009G019100 Sobic003G080800--Sobic009G019100 Sobic004G300000 Sobic004G300000 Sobic003G080800--Sobic004G300000 Sobic009G213800 Sobic009G213800 Sobic006G060601--Sobic009G213800 Sobic010G077400 Sobic010G077400 Sobic006G060601--Sobic010G077400 Sobic006G060601--Sobic001G275500 Sobic006G060601--Sobic005G175500 Sobic003G422800 Sobic003G422800 Sobic006G060601--Sobic003G422800 Sobic010G207500 Sobic010G207500 Sobic006G060601--Sobic010G207500 Sobic003G359500 Sobic003G359500 Sobic006G060601--Sobic003G359500 Sobic006G060601--Sobic009G019100 Sobic002G025700 Sobic002G025700 Sobic006G060601--Sobic002G025700 Sobic002G118101--Sobic001G053200 Sobic002G321800 Sobic002G321800 Sobic002G118101--Sobic002G321800 Sobic008G089800 Sobic008G089800 Sobic002G118101--Sobic008G089800 Sobic002G118101--Sobic008G027200 Sobic004G044900 Sobic004G044900 Sobic002G118101--Sobic004G044900 Sobic002G118101--Sobic007G084300 Sobic002G118101--Sobic003G080800 Sobic002G017500 Sobic002G017500 Sobic002G118101--Sobic002G017500 Sobic002G118101--Sobic001G413000 Sobic001G451700--Sobic007G157100 Sobic003G162100 Sobic003G162100 Sobic001G451700--Sobic003G162100 Sobic001G451700--Sobic006G213500 Sobic001G451700--Sobic002G373100 Sobic001G451700--Sobic005G045200 Sobic003G410900 Sobic003G410900 Sobic001G451700--Sobic003G410900 Sobic003G125400 Sobic003G125400 Sobic001G451700--Sobic003G125400 Sobic001G451700--Sobic008G027200 Sobic002G037800 Sobic002G037800 Sobic001G451700--Sobic002G037800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.