Gene annotation
Transcriptome id Sobic.001G275500.1,Sobic.001G275500.2
Synonym PTR2, PTR2-B, Sb01g027040, ATPTR2, NTR1, ATPTR2-B
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptide transporter PTR2, putative, expressed
UniProt C5WPW8
Pfam PF00854
Panther DB PTHR11654:SF175 PTHR11654 PTHR11654 PTHR11654:SF175
NCBI CDD KOG1237; H+/oligopeptide symporter
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity GO:0005215transporter activity GO:0006810transport GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT2G02040 : peptide transporter 2
RAP-DB (Rice) LOC_Os10g02260.1 : peptide transporter PTR2, putative, expressed
MaizeGDB (Corn) Zm00025a003675
Brachypodium KQK23355 , PNT78045
Barley HORVU2Hr1G001320.8 , HORVU2Hr1G001320.9 , HORVU2Hr1G001320.6 , HORVU2Hr1G001320.5 , HORVU2Hr1G001320.7 , HORVU2Hr1G001320.4 , HORVU2Hr1G001320.3 , HORVU4Hr1G004040.2 , HORVU4Hr1G004040.3 , HORVU4Hr1G004040.1 , HORVU4Hr1G004040.4 , HORVU2Hr1G001380.1
Wheat TraesCS6D02G132100 , TraesCS4A02G287300 , TraesCS7A02G381500 , TraesCS7D02G377800 , TraesCS7B02G283400 , TraesCS6B02G171000 , TraesCS4B02G026700 , TraesCS6A02G142600 , TraesCS4D02G024400 , TraesCSU02G207500
Populus -


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cDNA sequences
Sobic.001G275500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
2 Sobic.006G060601 - -
3 Sobic.009G019100 expressed protein K13473: chitin elicitor-binding protein
4 Sobic.003G359500 expressed protein -
5 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
6 Sobic.002G072100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G030600 xa21, putative, expressed -
8 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
9 Sobic.007G084300 kelch repeat protein, putative, expressed -
10 Sobic.002G137100 protein kinase family protein, putative, expressed -
11 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
12 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
13 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
14 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
15 Sobic.002G181300 expressed protein -
16 Sobic.008G027200 rp1, putative, expressed -
17 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
18 Sobic.010G077400 nitrilase, putative, expressed K13566: NIT2, omega-amidase
19 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
20 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic001G275500 Sobic001G275500 Sobic009G213800 Sobic009G213800 Sobic001G275500--Sobic009G213800 Sobic006G060601 Sobic006G060601 Sobic001G275500--Sobic006G060601 Sobic009G019100 Sobic009G019100 Sobic001G275500--Sobic009G019100 Sobic003G359500 Sobic003G359500 Sobic001G275500--Sobic003G359500 Sobic002G217200 Sobic002G217200 Sobic001G275500--Sobic002G217200 Sobic002G072100 Sobic002G072100 Sobic001G275500--Sobic002G072100 Sobic006G030600 Sobic006G030600 Sobic001G275500--Sobic006G030600 Sobic001G029200 Sobic001G029200 Sobic001G275500--Sobic001G029200 Sobic007G084300 Sobic007G084300 Sobic001G275500--Sobic007G084300 Sobic009G213800--Sobic009G019100 Sobic009G213800--Sobic001G275500 Sobic009G213800--Sobic006G060601 Sobic009G213800--Sobic001G029200 Sobic010G035500 Sobic010G035500 Sobic009G213800--Sobic010G035500 Sobic009G213800--Sobic003G359500 Sobic006G201100 Sobic006G201100 Sobic009G213800--Sobic006G201100 Sobic002G046900 Sobic002G046900 Sobic009G213800--Sobic002G046900 Sobic004G300000 Sobic004G300000 Sobic009G213800--Sobic004G300000 Sobic006G060601--Sobic009G213800 Sobic010G077400 Sobic010G077400 Sobic006G060601--Sobic010G077400 Sobic006G060601--Sobic001G275500 Sobic005G175500 Sobic005G175500 Sobic006G060601--Sobic005G175500 Sobic003G422800 Sobic003G422800 Sobic006G060601--Sobic003G422800 Sobic010G207500 Sobic010G207500 Sobic006G060601--Sobic010G207500 Sobic006G060601--Sobic003G359500 Sobic006G060601--Sobic009G019100 Sobic002G025700 Sobic002G025700 Sobic006G060601--Sobic002G025700 Sobic009G019100--Sobic009G213800 Sobic009G019100--Sobic010G035500 Sobic009G019100--Sobic001G029200 Sobic009G019100--Sobic002G046900 Sobic009G019100--Sobic004G300000 Sobic009G019100--Sobic005G175500 Sobic008G081900 Sobic008G081900 Sobic009G019100--Sobic008G081900 Sobic009G019100--Sobic003G359500 Sobic003G306700 Sobic003G306700 Sobic009G019100--Sobic003G306700 Sobic003G359500--Sobic004G300000 Sobic003G359500--Sobic002G025700 Sobic003G359500--Sobic010G035500 Sobic003G359500--Sobic009G213800 Sobic006G214700 Sobic006G214700 Sobic003G359500--Sobic006G214700 Sobic003G359500--Sobic006G201100 Sobic003G359500--Sobic009G019100 Sobic010G197000 Sobic010G197000 Sobic003G359500--Sobic010G197000 Sobic003G359500--Sobic006G060601 Sobic004G142800 Sobic004G142800 Sobic002G217200--Sobic004G142800 Sobic006G024500 Sobic006G024500 Sobic002G217200--Sobic006G024500 Sobic006G242000 Sobic006G242000 Sobic002G217200--Sobic006G242000 Sobic004G131040 Sobic004G131040 Sobic002G217200--Sobic004G131040 Sobic002G217200--Sobic001G275500 Sobic002G217200--Sobic009G213800 Sobic009G062800 Sobic009G062800 Sobic002G217200--Sobic009G062800 Sobic002G181300 Sobic002G181300 Sobic002G217200--Sobic002G181300 Sobic010G000600 Sobic010G000600 Sobic002G217200--Sobic010G000600 Sobic002G072100--Sobic001G029200 Sobic001G413000 Sobic001G413000 Sobic002G072100--Sobic001G413000 Sobic002G072100--Sobic010G035500 Sobic010G272800 Sobic010G272800 Sobic002G072100--Sobic010G272800 Sobic006G259600 Sobic006G259600 Sobic002G072100--Sobic006G259600 Sobic002G072100--Sobic008G081900 Sobic008G027200 Sobic008G027200 Sobic002G072100--Sobic008G027200 Sobic001G086800 Sobic001G086800 Sobic002G072100--Sobic001G086800 Sobic003G129600 Sobic003G129600 Sobic002G072100--Sobic003G129600 Sobic006G030600--Sobic007G084300 Sobic004G034600 Sobic004G034600 Sobic006G030600--Sobic004G034600 Sobic007G193700 Sobic007G193700 Sobic006G030600--Sobic007G193700 Sobic006G030600--Sobic004G131040 Sobic010G196500 Sobic010G196500 Sobic006G030600--Sobic010G196500 Sobic003G086900 Sobic003G086900 Sobic006G030600--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic006G030600--Sobic002G193100 Sobic006G143000 Sobic006G143000 Sobic006G030600--Sobic006G143000 Sobic006G030600--Sobic002G181300 Sobic001G029200--Sobic010G035500 Sobic001G029200--Sobic004G300000 Sobic001G029200--Sobic009G019100 Sobic001G029200--Sobic008G081900 Sobic001G029200--Sobic009G213800 Sobic007G227700 Sobic007G227700 Sobic001G029200--Sobic007G227700 Sobic001G029200--Sobic002G193100 Sobic004G026500 Sobic004G026500 Sobic001G029200--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic001G029200--Sobic002G339300 Sobic007G084300--Sobic006G030600 Sobic007G084300--Sobic006G143000 Sobic007G084300--Sobic010G196500 Sobic007G084300--Sobic004G034600 Sobic002G373100 Sobic002G373100 Sobic007G084300--Sobic002G373100 Sobic007G084300--Sobic003G086900 Sobic009G016600 Sobic009G016600 Sobic007G084300--Sobic009G016600 Sobic002G249300 Sobic002G249300 Sobic007G084300--Sobic002G249300 Sobic007G084300--Sobic002G193100
Octagon: transcription factors


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