Gene annotation
Transcriptome id Sobic.001G351900.1,Sobic.001G351900.3,Sobic.001G351900.2
Synonym Sb01g033670
Functional annotation integral membrane protein, putative, expressed
UniProt A0A1B6QMT8 , A0A1Z5S971 , H0I4C4 , C5WXR0
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G45870 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os06g49500.1,LOC_Os06g49500.2 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a052093 , Zm00025a041754
Brachypodium KQK17489 , KQK17490 , KQK17491
Barley HORVU7Hr1G095750.3 , HORVU7Hr1G095750.2 , HORVU7Hr1G095750.1 , HORVU7Hr1G095750.7 , HORVU7Hr1G095750.6 , HORVU7Hr1G095750.5 , HORVU7Hr1G095750.4 , HORVU7Hr1G095750.9 , HORVU7Hr1G095750.8 , HORVU7Hr1G095750.12 , HORVU7Hr1G095750.11 , HORVU7Hr1G095750.10 , HORVU6Hr1G068730.4 , HORVU6Hr1G068730.1 , HORVU6Hr1G068730.2 , HORVU6Hr1G068730.3 , HORVU6Hr1G050960.2 , HORVU6Hr1G050960.1
Wheat TraesCS6B02G298700 , TraesCS7D02G403100 , TraesCS7D02G403100 , TraesCS6D02G251700 , TraesCS6A02G271500 , TraesCS7A02G409900 , TraesCS7B02G309300 , TraesCS7B02G309300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G351900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase
2 Sobic.010G205500 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
4 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
5 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
6 Sobic.010G251200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K12447: UDP-sugar pyrophosphorylase
7 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
8 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.001G389800 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
11 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
12 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
13 Sobic.009G148300 expressed protein -
14 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
15 Sobic.006G043600 cysteine proteinase 1 precursor, putative, expressed K01373: cathepsin F
16 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
17 Sobic.002G140700 triacylglycerol lipase 1 precursor, putative, expressed -
18 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
19 Sobic.010G176500 expressed protein -
20 Sobic.001G146800 expressed protein -


Gene co-expression network
sample Sobic001G351900 Sobic001G351900 Sobic002G415900 Sobic002G415900 Sobic001G351900--Sobic002G415900 Sobic010G205500 Sobic010G205500 Sobic001G351900--Sobic010G205500 Sobic009G199200 Sobic009G199200 Sobic001G351900--Sobic009G199200 Sobic004G127700 Sobic004G127700 Sobic001G351900--Sobic004G127700 Sobic002G189400 Sobic002G189400 Sobic001G351900--Sobic002G189400 Sobic010G251200 Sobic010G251200 Sobic001G351900--Sobic010G251200 Sobic003G241500 Sobic003G241500 Sobic001G351900--Sobic003G241500 Sobic004G113400 Sobic004G113400 Sobic001G351900--Sobic004G113400 Sobic001G111150 Sobic001G111150 Sobic001G351900--Sobic001G111150 Sobic007G068100 Sobic007G068100 Sobic002G415900--Sobic007G068100 Sobic001G474500 Sobic001G474500 Sobic002G415900--Sobic001G474500 Sobic009G057300 Sobic009G057300 Sobic002G415900--Sobic009G057300 Sobic003G388251 Sobic003G388251 Sobic002G415900--Sobic003G388251 Sobic002G415900--Sobic001G111150 Sobic001G322700 Sobic001G322700 Sobic002G415900--Sobic001G322700 Sobic003G200100 Sobic003G200100 Sobic002G415900--Sobic003G200100 Sobic003G226200 Sobic003G226200 Sobic002G415900--Sobic003G226200 Sobic004G124200 Sobic004G124200 Sobic002G415900--Sobic004G124200 Sobic010G205500--Sobic001G474500 Sobic010G205500--Sobic007G068100 Sobic004G266400 Sobic004G266400 Sobic010G205500--Sobic004G266400 Sobic010G205500--Sobic003G388251 Sobic001G176600 Sobic001G176600 Sobic010G205500--Sobic001G176600 Sobic010G205500--Sobic001G111150 Sobic003G100800 Sobic003G100800 Sobic010G205500--Sobic003G100800 Sobic010G205500--Sobic010G251200 Sobic009G034700 Sobic009G034700 Sobic010G205500--Sobic009G034700 Sobic001G000200 Sobic001G000200 Sobic009G199200--Sobic001G000200 Sobic003G233600 Sobic003G233600 Sobic009G199200--Sobic003G233600 Sobic008G004600 Sobic008G004600 Sobic009G199200--Sobic008G004600 Sobic002G317300 Sobic002G317300 Sobic009G199200--Sobic002G317300 Sobic010G205800 Sobic010G205800 Sobic009G199200--Sobic010G205800 Sobic001G186800 Sobic001G186800 Sobic009G199200--Sobic001G186800 Sobic001G281600 Sobic001G281600 Sobic009G199200--Sobic001G281600 Sobic002G166300 Sobic002G166300 Sobic009G199200--Sobic002G166300 Sobic002G260900 Sobic002G260900 Sobic009G199200--Sobic002G260900 Sobic004G127700--Sobic003G233600 Sobic009G094300 Sobic009G094300 Sobic004G127700--Sobic009G094300 Sobic002G308500 Sobic002G308500 Sobic004G127700--Sobic002G308500 Sobic004G339100 Sobic004G339100 Sobic004G127700--Sobic004G339100 Sobic001G120300 Sobic001G120300 Sobic004G127700--Sobic001G120300 Sobic004G127700--Sobic001G111150 Sobic009G139900 Sobic009G139900 Sobic004G127700--Sobic009G139900 Sobic004G127700--Sobic009G057300 Sobic004G136300 Sobic004G136300 Sobic004G127700--Sobic004G136300 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic009G148300 Sobic009G148300 Sobic002G189400--Sobic009G148300 Sobic007G202600 Sobic007G202600 Sobic002G189400--Sobic007G202600 Sobic002G189400--Sobic004G113400 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic010G251200--Sobic003G100800 Sobic010G251200--Sobic009G094300 Sobic010G251200--Sobic001G474500 Sobic003G259100 Sobic003G259100 Sobic010G251200--Sobic003G259100 Sobic006G037700 Sobic006G037700 Sobic010G251200--Sobic006G037700 Sobic004G052900 Sobic004G052900 Sobic010G251200--Sobic004G052900 Sobic010G251200--Sobic009G057300 Sobic001G248300 Sobic001G248300 Sobic010G251200--Sobic001G248300 Sobic007G088100 Sobic007G088100 Sobic010G251200--Sobic007G088100 Sobic002G087800 Sobic002G087800 Sobic003G241500--Sobic002G087800 Sobic002G315800 Sobic002G315800 Sobic003G241500--Sobic002G315800 Sobic003G241500--Sobic002G415900 Sobic005G024900 Sobic005G024900 Sobic003G241500--Sobic005G024900 Sobic004G345800 Sobic004G345800 Sobic003G241500--Sobic004G345800 Sobic003G241500--Sobic009G057300 Sobic003G241500--Sobic004G127700 Sobic003G241500--Sobic001G474500 Sobic003G428400 Sobic003G428400 Sobic003G241500--Sobic003G428400 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic010G130200 Sobic010G130200 Sobic001G111150--Sobic010G130200 Sobic001G111150--Sobic007G068100 Sobic001G111150--Sobic009G057300 Sobic003G354400 Sobic003G354400 Sobic001G111150--Sobic003G354400 Sobic010G001500 Sobic010G001500 Sobic001G111150--Sobic010G001500 Sobic001G111150--Sobic003G388251 Sobic001G111150--Sobic001G474500 Sobic001G111150--Sobic004G127700 Sobic001G111150--Sobic004G124200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.