Gene annotation
Transcriptome id Sobic.001G389800.1
Synonym ATASD1, ASD1, ARAF1, ARAF
Functional annotation alpha-N-arabinofuranosidase A, putative, expressed
UniProt A0A1B6QNI8
Pfam PF06964
Panther DB PTHR31776 PTHR31776:SF3
NCBI CDD -
KEGG Orthology K01209; alpha-L-arabinofuranosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10740 : alpha-L-arabinofuranosidase 1
RAP-DB (Rice) LOC_Os03g20420.1 : alpha-N-arabinofuranosidase A, putative, expressed
MaizeGDB (Corn) Zm00025a015476 , Zm00025a002236
Brachypodium KQK21925 , PNT77514 , KQK14561 , KQK21924
Barley HORVU4Hr1G052170.19 , HORVU4Hr1G052170.18 , HORVU4Hr1G052170.11 , HORVU4Hr1G052170.10 , HORVU4Hr1G052170.13 , HORVU4Hr1G052170.12 , HORVU4Hr1G052170.15 , HORVU4Hr1G052170.14 , HORVU4Hr1G052170.17 , HORVU4Hr1G052170.16 , HORVU2Hr1G026740.17 , HORVU2Hr1G026740.16 , HORVU2Hr1G026740.14 , HORVU2Hr1G026740.13 , HORVU2Hr1G026740.12 , HORVU2Hr1G026740.10 , HORVU2Hr1G026740.19 , HORVU2Hr1G026740.18 , HORVU2Hr1G026740.5 , HORVU2Hr1G026740.2 , HORVU4Hr1G052170.21 , HORVU4Hr1G052170.22 , HORVU2Hr1G026740.31 , HORVU2Hr1G026740.32 , HORVU2Hr1G026740.34 , HORVU2Hr1G026740.26 , HORVU2Hr1G026740.22 , HORVU2Hr1G026740.23 , HORVU2Hr1G026740.20 , HORVU4Hr1G052170.9 , HORVU4Hr1G052170.8 , HORVU4Hr1G052170.5 , HORVU4Hr1G052170.4 , HORVU4Hr1G052170.7 , HORVU4Hr1G052170.6 , HORVU4Hr1G052170.1 , HORVU4Hr1G052170.3 , HORVU4Hr1G052170.2 , HORVU4Hr1G052170.24 , HORVU4Hr1G052170.20 , HORVU4Hr1G052170.23
Wheat TraesCS4D02G179500 , TraesCS4A02G186500 , TraesCS4A02G186500 , TraesCS4A02G186500 , TraesCS4A02G186500 , TraesCS2A02G098400 , TraesCS2D02G097800 , TraesCS2D02G097800 , TraesCS2A02G098400 , TraesCS4A02G127000 , TraesCS4B02G177900 , TraesCS2B02G114500 , TraesCS2B02G114500 , TraesCS4D02G127100 , TraesCS4D02G127100
Populus -


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cDNA sequences
Sobic.001G389800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G301500 amidase, putative, expressed K01426: E3.5.1.4, amidase
2 Sobic.002G392700 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
3 Sobic.009G178300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.010G043600 IQ calmodulin-binding motif domain containing protein, expressed -
5 Sobic.010G106900 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed -
6 Sobic.004G030100 glycosyltransferase, putative, expressed -
7 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
8 Sobic.007G203500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
9 Sobic.010G249300 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.006G000700 - -
11 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
12 Sobic.001G000200 TBC domain containing protein, expressed -
13 Sobic.007G002300 protein kinase family protein, putative, expressed K17535: serine/threonine-protein kinase TNNI3K
14 Sobic.003G196900 esterase/lipase/thioesterase, putative, expressed K06889: uncharacterized protein
15 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
16 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
17 Sobic.001G394600 expressed protein -
18 Sobic.009G227900 expressed protein K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
20 Sobic.002G317300 CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic001G389800 Sobic001G389800 Sobic002G301500 Sobic002G301500 Sobic001G389800--Sobic002G301500 Sobic002G392700 Sobic002G392700 Sobic001G389800--Sobic002G392700 Sobic009G178300 Sobic009G178300 Sobic001G389800--Sobic009G178300 Sobic010G043600 Sobic010G043600 Sobic001G389800--Sobic010G043600 Sobic010G106900 Sobic010G106900 Sobic001G389800--Sobic010G106900 Sobic004G030100 Sobic004G030100 Sobic001G389800--Sobic004G030100 Sobic009G199200 Sobic009G199200 Sobic001G389800--Sobic009G199200 Sobic007G203500 Sobic007G203500 Sobic001G389800--Sobic007G203500 Sobic010G249300 Sobic010G249300 Sobic001G389800--Sobic010G249300 Sobic010G256800 Sobic010G256800 Sobic002G301500--Sobic010G256800 Sobic010G021000 Sobic010G021000 Sobic002G301500--Sobic010G021000 Sobic010G256932 Sobic010G256932 Sobic002G301500--Sobic010G256932 Sobic002G301500--Sobic001G389800 Sobic002G301500--Sobic010G106900 Sobic010G084000 Sobic010G084000 Sobic002G301500--Sobic010G084000 Sobic001G366800 Sobic001G366800 Sobic002G301500--Sobic001G366800 Sobic002G301500--Sobic010G249300 Sobic002G301500--Sobic007G203500 Sobic002G189400 Sobic002G189400 Sobic002G392700--Sobic002G189400 Sobic002G392700--Sobic010G106900 Sobic002G392700--Sobic001G389800 Sobic002G409800 Sobic002G409800 Sobic002G392700--Sobic002G409800 Sobic006G281500 Sobic006G281500 Sobic002G392700--Sobic006G281500 Sobic010G017800 Sobic010G017800 Sobic002G392700--Sobic010G017800 Sobic004G325400 Sobic004G325400 Sobic002G392700--Sobic004G325400 Sobic002G392700--Sobic010G249300 Sobic002G317300 Sobic002G317300 Sobic002G392700--Sobic002G317300 Sobic007G002300 Sobic007G002300 Sobic009G178300--Sobic007G002300 Sobic006G153900 Sobic006G153900 Sobic009G178300--Sobic006G153900 Sobic009G178300--Sobic010G021000 Sobic001G384900 Sobic001G384900 Sobic009G178300--Sobic001G384900 Sobic001G275900 Sobic001G275900 Sobic009G178300--Sobic001G275900 Sobic009G178300--Sobic004G030100 Sobic002G164800 Sobic002G164800 Sobic009G178300--Sobic002G164800 Sobic004G018300 Sobic004G018300 Sobic009G178300--Sobic004G018300 Sobic003G141500 Sobic003G141500 Sobic009G178300--Sobic003G141500 Sobic001G372000 Sobic001G372000 Sobic010G043600--Sobic001G372000 Sobic001G467000 Sobic001G467000 Sobic010G043600--Sobic001G467000 Sobic010G043600--Sobic002G301500 Sobic010G043600--Sobic010G249300 Sobic010G043600--Sobic007G203500 Sobic010G043600--Sobic001G389800 Sobic001G464100 Sobic001G464100 Sobic010G043600--Sobic001G464100 Sobic001G291100 Sobic001G291100 Sobic010G043600--Sobic001G291100 Sobic010G043600--Sobic002G317300 Sobic010G147833 Sobic010G147833 Sobic010G106900--Sobic010G147833 Sobic003G126600 Sobic003G126600 Sobic010G106900--Sobic003G126600 Sobic002G260900 Sobic002G260900 Sobic010G106900--Sobic002G260900 Sobic001G017600 Sobic001G017600 Sobic010G106900--Sobic001G017600 Sobic008G133400 Sobic008G133400 Sobic010G106900--Sobic008G133400 Sobic008G083000 Sobic008G083000 Sobic010G106900--Sobic008G083000 Sobic010G106900--Sobic007G203500 Sobic010G106900--Sobic002G392700 Sobic010G106900--Sobic002G301500 Sobic004G030100--Sobic007G002300 Sobic006G058100 Sobic006G058100 Sobic004G030100--Sobic006G058100 Sobic010G005600 Sobic010G005600 Sobic004G030100--Sobic010G005600 Sobic002G143500 Sobic002G143500 Sobic004G030100--Sobic002G143500 Sobic010G175500 Sobic010G175500 Sobic004G030100--Sobic010G175500 Sobic004G030100--Sobic009G178300 Sobic001G000200 Sobic001G000200 Sobic004G030100--Sobic001G000200 Sobic004G021200 Sobic004G021200 Sobic004G030100--Sobic004G021200 Sobic001G261200 Sobic001G261200 Sobic004G030100--Sobic001G261200 Sobic009G199200--Sobic001G000200 Sobic003G233600 Sobic003G233600 Sobic009G199200--Sobic003G233600 Sobic008G004600 Sobic008G004600 Sobic009G199200--Sobic008G004600 Sobic009G199200--Sobic002G317300 Sobic010G205800 Sobic010G205800 Sobic009G199200--Sobic010G205800 Sobic001G186800 Sobic001G186800 Sobic009G199200--Sobic001G186800 Sobic001G281600 Sobic001G281600 Sobic009G199200--Sobic001G281600 Sobic002G166300 Sobic002G166300 Sobic009G199200--Sobic002G166300 Sobic009G199200--Sobic002G260900 Sobic007G203500--Sobic010G017800 Sobic007G203500--Sobic003G126600 Sobic003G401000 Sobic003G401000 Sobic007G203500--Sobic003G401000 Sobic006G052500 Sobic006G052500 Sobic007G203500--Sobic006G052500 Sobic001G539016 Sobic001G539016 Sobic007G203500--Sobic001G539016 Sobic003G313400 Sobic003G313400 Sobic007G203500--Sobic003G313400 Sobic009G257800 Sobic009G257800 Sobic007G203500--Sobic009G257800 Sobic009G229600 Sobic009G229600 Sobic007G203500--Sobic009G229600 Sobic007G203500--Sobic010G106900 Sobic004G185600 Sobic004G185600 Sobic010G249300--Sobic004G185600 Sobic010G146600 Sobic010G146600 Sobic010G249300--Sobic010G146600 Sobic010G249300--Sobic002G317300 Sobic010G249300--Sobic008G083000 Sobic010G249300--Sobic001G291100 Sobic010G249300--Sobic001G281600 Sobic006G047100 Sobic006G047100 Sobic010G249300--Sobic006G047100 Sobic010G249300--Sobic001G464100 Sobic009G050900 Sobic009G050900 Sobic010G249300--Sobic009G050900
Octagon: transcription factors


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