Gene annotation
Transcriptome id Sobic.001G357500.2
Synonym Sb01g034150
Functional annotation amino acid permease family protein, putative, expressed
UniProt C5WYM7
Pfam PF00324
Panther DB PTHR11785 PTHR11785:SF378
NCBI CDD KOG1287; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0015171amino acid transmembrane transporter activity GO:0003333amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G13620 : Amino acid permease family protein
RAP-DB (Rice) LOC_Os03g25920.1 : amino acid permease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002655 , Zm00025a002652 , Zm00025a002651 , Zm00025a021671
Brachypodium KQK21520
Barley HORVU3Hr1G005010.4 , HORVU3Hr1G005010.3 , HORVU7Hr1G106710.8 , HORVU7Hr1G106710.9 , HORVU7Hr1G106710.1 , HORVU7Hr1G106710.2 , HORVU7Hr1G106710.3 , HORVU7Hr1G106710.4 , HORVU7Hr1G106710.5 , HORVU7Hr1G106710.6 , HORVU7Hr1G106710.7
Wheat TraesCS7B02G365600 , TraesCS5D02G321300 , TraesCS5D02G531700 , TraesCS5A02G315000 , TraesCS3B02G031700 , TraesCS5B02G533500 , TraesCS3A02G030900 , TraesCS7A02G464900 , TraesCS7D02G452600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G232266 - -
2 Sobic.001G234800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
3 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
4 Sobic.005G109000 cytochrome P450, putative, expressed -
5 Sobic.009G198600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.006G101100 expressed protein -
7 Sobic.003G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML16 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.003G041600 DUF623 domain containing protein, expressed -
10 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
11 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.010G160033 - -
13 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -
14 Sobic.005G155600 LYK, putative, expressed -
15 Sobic.008G044300 U-box domain-containing protein, putative, expressed -
16 Sobic.002G202100 expressed protein -
17 Sobic.006G101300 expressed protein -
18 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
19 Sobic.002G070200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G357500 Sobic001G357500 Sobic009G232266 Sobic009G232266 Sobic001G357500--Sobic009G232266 Sobic001G234800 Sobic001G234800 Sobic001G357500--Sobic001G234800 Sobic001G259900 Sobic001G259900 Sobic001G357500--Sobic001G259900 Sobic005G109000 Sobic005G109000 Sobic001G357500--Sobic005G109000 Sobic009G198600 Sobic009G198600 Sobic001G357500--Sobic009G198600 Sobic006G101100 Sobic006G101100 Sobic001G357500--Sobic006G101100 Sobic003G082600 Sobic003G082600 Sobic001G357500--Sobic003G082600 Sobic003G102200 Sobic003G102200 Sobic001G357500--Sobic003G102200 Sobic003G041600 Sobic003G041600 Sobic001G357500--Sobic003G041600 Sobic009G232266--Sobic001G357500 Sobic009G236800 Sobic009G236800 Sobic009G232266--Sobic009G236800 Sobic003G277500 Sobic003G277500 Sobic009G232266--Sobic003G277500 Sobic003G271201 Sobic003G271201 Sobic009G232266--Sobic003G271201 Sobic008G113000 Sobic008G113000 Sobic009G232266--Sobic008G113000 Sobic009G232266--Sobic003G041600 Sobic005G155600 Sobic005G155600 Sobic009G232266--Sobic005G155600 Sobic004G010300 Sobic004G010300 Sobic009G232266--Sobic004G010300 Sobic010G178200 Sobic010G178200 Sobic009G232266--Sobic010G178200 Sobic002G302500 Sobic002G302500 Sobic001G234800--Sobic002G302500 Sobic006G206000 Sobic006G206000 Sobic001G234800--Sobic006G206000 Sobic006G180100 Sobic006G180100 Sobic001G234800--Sobic006G180100 Sobic002G353900 Sobic002G353900 Sobic001G234800--Sobic002G353900 Sobic009G065300 Sobic009G065300 Sobic001G234800--Sobic009G065300 Sobic009G221400 Sobic009G221400 Sobic001G234800--Sobic009G221400 Sobic010G166500 Sobic010G166500 Sobic001G234800--Sobic010G166500 Sobic002G338500 Sobic002G338500 Sobic001G234800--Sobic002G338500 Sobic002G327300 Sobic002G327300 Sobic001G234800--Sobic002G327300 Sobic003G442100 Sobic003G442100 Sobic001G259900--Sobic003G442100 Sobic006G007900 Sobic006G007900 Sobic001G259900--Sobic006G007900 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic009G184000 Sobic009G184000 Sobic001G259900--Sobic009G184000 Sobic006G235100 Sobic006G235100 Sobic001G259900--Sobic006G235100 Sobic004G191400 Sobic004G191400 Sobic001G259900--Sobic004G191400 Sobic001G310600 Sobic001G310600 Sobic001G259900--Sobic001G310600 Sobic001G079300 Sobic001G079300 Sobic001G259900--Sobic001G079300 Sobic010G209100 Sobic010G209100 Sobic005G109000--Sobic010G209100 Sobic002G214800 Sobic002G214800 Sobic005G109000--Sobic002G214800 Sobic002G202100 Sobic002G202100 Sobic005G109000--Sobic002G202100 Sobic007G151100 Sobic007G151100 Sobic005G109000--Sobic007G151100 Sobic002G245800 Sobic002G245800 Sobic005G109000--Sobic002G245800 Sobic010G267600 Sobic010G267600 Sobic005G109000--Sobic010G267600 Sobic001G259600 Sobic001G259600 Sobic005G109000--Sobic001G259600 Sobic010G083600 Sobic010G083600 Sobic005G109000--Sobic010G083600 Sobic001G449700 Sobic001G449700 Sobic005G109000--Sobic001G449700 Sobic009G198600--Sobic001G259900 Sobic009G198600--Sobic003G442100 Sobic009G198600--Sobic001G310600 Sobic008G044300 Sobic008G044300 Sobic009G198600--Sobic008G044300 Sobic005G186100 Sobic005G186100 Sobic009G198600--Sobic005G186100 Sobic009G198600--Sobic009G184000 Sobic001G502400 Sobic001G502400 Sobic009G198600--Sobic001G502400 Sobic009G198600--Sobic006G235100 Sobic005G139075 Sobic005G139075 Sobic009G198600--Sobic005G139075 Sobic009G192600 Sobic009G192600 Sobic006G101100--Sobic009G192600 Sobic006G101300 Sobic006G101300 Sobic006G101100--Sobic006G101300 Sobic008G066200 Sobic008G066200 Sobic006G101100--Sobic008G066200 Sobic006G101100--Sobic001G259900 Sobic003G313100 Sobic003G313100 Sobic006G101100--Sobic003G313100 Sobic010G082600 Sobic010G082600 Sobic006G101100--Sobic010G082600 Sobic002G012500 Sobic002G012500 Sobic006G101100--Sobic002G012500 Sobic001G259400 Sobic001G259400 Sobic006G101100--Sobic001G259400 Sobic003G142300 Sobic003G142300 Sobic006G101100--Sobic003G142300 Sobic003G082600--Sobic010G267600 Sobic003G082600--Sobic002G245800 Sobic002G405600 Sobic002G405600 Sobic003G082600--Sobic002G405600 Sobic003G092900 Sobic003G092900 Sobic003G082600--Sobic003G092900 Sobic003G082600--Sobic005G109000 Sobic003G202200 Sobic003G202200 Sobic003G082600--Sobic003G202200 Sobic001G259700 Sobic001G259700 Sobic003G082600--Sobic001G259700 Sobic003G082600--Sobic003G102200 Sobic003G021500 Sobic003G021500 Sobic003G082600--Sobic003G021500 Sobic003G102200--Sobic001G449700 Sobic003G110200 Sobic003G110200 Sobic003G102200--Sobic003G110200 Sobic001G195100 Sobic001G195100 Sobic003G102200--Sobic001G195100 Sobic003G102200--Sobic001G259700 Sobic001G383700 Sobic001G383700 Sobic003G102200--Sobic001G383700 Sobic007G149300 Sobic007G149300 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic002G373001 Sobic002G373001 Sobic003G102200--Sobic002G373001 Sobic003G250600 Sobic003G250600 Sobic003G102200--Sobic003G250600 Sobic003G041600--Sobic009G221400 Sobic003G041600--Sobic008G044300 Sobic006G143400 Sobic006G143400 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G364300 Sobic003G364300 Sobic003G041600--Sobic003G364300 Sobic001G091600 Sobic001G091600 Sobic003G041600--Sobic001G091600 Sobic003G041600--Sobic010G166500 Sobic001G477600 Sobic001G477600 Sobic003G041600--Sobic001G477600 Sobic010G156500 Sobic010G156500 Sobic003G041600--Sobic010G156500
Octagon: transcription factors


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