Gene annotation
Transcriptome id Sobic.001G417800.1
Synonym Sb01g039320, AGD6
Functional annotation GTPase-activating protein, putative, expressed
UniProt C5WPD5
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF293
NCBI CDD KOG0704; ADP-ribosylation factor GTPase activator
KEGG Orthology K12492; ADP-ribosylation factor GTPase-activating protein 1
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT2G37550 : ARF-GAP domain 7
RAP-DB (Rice) LOC_Os03g17020.2 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a052740 , Zm00025a001878
Brachypodium KQK22312
Barley HORVU4Hr1G059060.2 , HORVU4Hr1G059060.3 , HORVU4Hr1G059060.1
Wheat TraesCS4B02G204900 , TraesCS4A02G099400 , TraesCS4D02G205800
Populus -


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cDNA sequences
Sobic.001G417800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G101300 expressed protein -
2 Sobic.007G038800 expressed protein -
3 Sobic.008G001100 tonneau 1b, putative, expressed K16546: FGFR1 oncogene partner
4 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
5 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
6 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
7 Sobic.002G368400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
8 Sobic.006G207500 expressed protein -
9 Sobic.002G277300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
10 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
11 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
12 Sobic.002G179500 holocarboxylase synthetase, putative, expressed -
13 Sobic.007G026100 Divergent PAP2 family domain containing protein, expressed K09775: uncharacterized protein
14 Sobic.003G429700 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.010G099200 viral-response family protein, expressed -
16 Sobic.002G254650 - -
17 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
18 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
19 Sobic.004G242100 expressed protein -
20 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -


Gene co-expression network
sample Sobic001G417800 Sobic001G417800 Sobic003G101300 Sobic003G101300 Sobic001G417800--Sobic003G101300 Sobic007G038800 Sobic007G038800 Sobic001G417800--Sobic007G038800 Sobic008G001100 Sobic008G001100 Sobic001G417800--Sobic008G001100 Sobic003G317200 Sobic003G317200 Sobic001G417800--Sobic003G317200 Sobic001G424500 Sobic001G424500 Sobic001G417800--Sobic001G424500 Sobic007G126200 Sobic007G126200 Sobic001G417800--Sobic007G126200 Sobic002G368400 Sobic002G368400 Sobic001G417800--Sobic002G368400 Sobic006G207500 Sobic006G207500 Sobic001G417800--Sobic006G207500 Sobic002G277300 Sobic002G277300 Sobic001G417800--Sobic002G277300 Sobic001G309100 Sobic001G309100 Sobic003G101300--Sobic001G309100 Sobic010G211300 Sobic010G211300 Sobic003G101300--Sobic010G211300 Sobic009G034400 Sobic009G034400 Sobic003G101300--Sobic009G034400 Sobic001G028400 Sobic001G028400 Sobic003G101300--Sobic001G028400 Sobic010G071200 Sobic010G071200 Sobic003G101300--Sobic010G071200 Sobic004G349100 Sobic004G349100 Sobic003G101300--Sobic004G349100 Sobic003G024800 Sobic003G024800 Sobic003G101300--Sobic003G024800 Sobic009G036900 Sobic009G036900 Sobic003G101300--Sobic009G036900 Sobic003G101300--Sobic001G424500 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G192100 Sobic007G192100 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic008G108500 Sobic008G108500 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic005G000800 Sobic005G000800 Sobic008G001100--Sobic005G000800 Sobic001G529000 Sobic001G529000 Sobic008G001100--Sobic001G529000 Sobic010G105600 Sobic010G105600 Sobic008G001100--Sobic010G105600 Sobic004G305600 Sobic004G305600 Sobic008G001100--Sobic004G305600 Sobic006G110300 Sobic006G110300 Sobic008G001100--Sobic006G110300 Sobic003G124800 Sobic003G124800 Sobic008G001100--Sobic003G124800 Sobic001G439600 Sobic001G439600 Sobic008G001100--Sobic001G439600 Sobic008G001100--Sobic003G101300 Sobic006G257001 Sobic006G257001 Sobic008G001100--Sobic006G257001 Sobic010G055500 Sobic010G055500 Sobic003G317200--Sobic010G055500 Sobic003G317200--Sobic010G071200 Sobic006G109300 Sobic006G109300 Sobic003G317200--Sobic006G109300 Sobic008G142700 Sobic008G142700 Sobic003G317200--Sobic008G142700 Sobic001G206000 Sobic001G206000 Sobic003G317200--Sobic001G206000 Sobic001G441600 Sobic001G441600 Sobic003G317200--Sobic001G441600 Sobic004G231400 Sobic004G231400 Sobic003G317200--Sobic004G231400 Sobic001G149700 Sobic001G149700 Sobic003G317200--Sobic001G149700 Sobic001G138300 Sobic001G138300 Sobic003G317200--Sobic001G138300 Sobic001G424500--Sobic009G036900 Sobic001G424500--Sobic009G034400 Sobic001G127400 Sobic001G127400 Sobic001G424500--Sobic001G127400 Sobic001G424500--Sobic003G101300 Sobic001G424500--Sobic003G024800 Sobic001G424500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic001G424500--Sobic004G122000 Sobic001G424500--Sobic002G068300 Sobic002G121000 Sobic002G121000 Sobic001G424500--Sobic002G121000 Sobic007G126200--Sobic001G149700 Sobic007G126200--Sobic010G071200 Sobic007G126200--Sobic009G036900 Sobic003G273100 Sobic003G273100 Sobic007G126200--Sobic003G273100 Sobic007G126200--Sobic004G231400 Sobic007G126200--Sobic010G055500 Sobic003G116700 Sobic003G116700 Sobic007G126200--Sobic003G116700 Sobic007G126200--Sobic002G068300 Sobic001G350501 Sobic001G350501 Sobic007G126200--Sobic001G350501 Sobic003G332401 Sobic003G332401 Sobic002G368400--Sobic003G332401 Sobic003G116600 Sobic003G116600 Sobic002G368400--Sobic003G116600 Sobic009G199700 Sobic009G199700 Sobic002G368400--Sobic009G199700 Sobic009G059700 Sobic009G059700 Sobic002G368400--Sobic009G059700 Sobic001G367000 Sobic001G367000 Sobic002G368400--Sobic001G367000 Sobic001G526100 Sobic001G526100 Sobic002G368400--Sobic001G526100 Sobic001G283500 Sobic001G283500 Sobic002G368400--Sobic001G283500 Sobic007G195701 Sobic007G195701 Sobic002G368400--Sobic007G195701 Sobic001G309500 Sobic001G309500 Sobic002G368400--Sobic001G309500 Sobic010G267500 Sobic010G267500 Sobic006G207500--Sobic010G267500 Sobic010G065400 Sobic010G065400 Sobic006G207500--Sobic010G065400 Sobic009G031200 Sobic009G031200 Sobic006G207500--Sobic009G031200 Sobic006G183000 Sobic006G183000 Sobic006G207500--Sobic006G183000 Sobic006G222400 Sobic006G222400 Sobic006G207500--Sobic006G222400 Sobic007G097900 Sobic007G097900 Sobic006G207500--Sobic007G097900 Sobic003G052400 Sobic003G052400 Sobic006G207500--Sobic003G052400 Sobic001G061700 Sobic001G061700 Sobic006G207500--Sobic001G061700 Sobic008G137600 Sobic008G137600 Sobic006G207500--Sobic008G137600 Sobic004G068500 Sobic004G068500 Sobic002G277300--Sobic004G068500 Sobic007G018200 Sobic007G018200 Sobic002G277300--Sobic007G018200 Sobic003G038600 Sobic003G038600 Sobic002G277300--Sobic003G038600 Sobic007G111100 Sobic007G111100 Sobic002G277300--Sobic007G111100 Sobic003G062400 Sobic003G062400 Sobic002G277300--Sobic003G062400 Sobic010G055800 Sobic010G055800 Sobic002G277300--Sobic010G055800 Sobic009G125000 Sobic009G125000 Sobic002G277300--Sobic009G125000 Sobic001G038100 Sobic001G038100 Sobic002G277300--Sobic001G038100 Sobic008G192000 Sobic008G192000 Sobic002G277300--Sobic008G192000
Octagon: transcription factors


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