Gene annotation
Transcriptome id Sobic.001G438100.1
Synonym Sb01g041190, KCS1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
3-ketoacyl-CoA synthase, putative, expressed
UniProt A0A1B6QPD4
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF14
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G01120 : 3-ketoacyl-CoA synthase 1
RAP-DB (Rice) LOC_Os03g14170.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a000930 , Zm00025a001551 , Zm00025a042702 , Zm00025a029505 , Zm00025a044614 , Zm00025a044659 , Zm00025a003809 , Zm00025a036645 , Zm00025a052892
Brachypodium KQJ89024 , KQK04750 , KQK04806 , KQJ96727 , KQK18680 , PNT67097 , PNT77754 , PNT77755 , KQK01599 , KQK23304
Barley HORVU6Hr1G073300.1 , HORVU4Hr1G076940.2 , HORVU6Hr1G004830.1 , HORVU3Hr1G054500.1 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU1Hr1G086760.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU4Hr1G076940.3 , HORVU4Hr1G063420.5 , HORVU4Hr1G063420.4 , HORVU4Hr1G063420.3 , HORVU4Hr1G063420.2 , HORVU4Hr1G063420.1
Wheat TraesCS4D02G296400 , TraesCS6D02G071600 , TraesCS6A02G073300 , TraesCS6B02G373000 , TraesCS4A02G164400 , TraesCS6B02G098300 , TraesCS4D02G148300 , TraesCS4B02G297500 , TraesCS4A02G007400
Populus -


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cDNA sequences
Sobic.001G438100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
2 Sobic.010G265500 expressed protein -
3 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
4 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
5 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
6 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
7 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
8 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
9 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
10 Sobic.001G353800 protein kinase domain containing protein, expressed -
11 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
12 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
13 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
14 Sobic.001G498300 galactose mutarotase-like, putative, expressed -
15 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
16 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
17 Sobic.001G042301 - -
18 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
19 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
20 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V


Gene co-expression network
sample Sobic001G438100 Sobic001G438100 Sobic007G023300 Sobic007G023300 Sobic001G438100--Sobic007G023300 Sobic010G265500 Sobic010G265500 Sobic001G438100--Sobic010G265500 Sobic004G193400 Sobic004G193400 Sobic001G438100--Sobic004G193400 Sobic002G030200 Sobic002G030200 Sobic001G438100--Sobic002G030200 Sobic001G339100 Sobic001G339100 Sobic001G438100--Sobic001G339100 Sobic001G206200 Sobic001G206200 Sobic001G438100--Sobic001G206200 Sobic004G238500 Sobic004G238500 Sobic001G438100--Sobic004G238500 Sobic008G063500 Sobic008G063500 Sobic001G438100--Sobic008G063500 Sobic002G414400 Sobic002G414400 Sobic001G438100--Sobic002G414400 Sobic007G023300--Sobic004G193400 Sobic007G023300--Sobic002G414400 Sobic001G407900 Sobic001G407900 Sobic007G023300--Sobic001G407900 Sobic007G023300--Sobic008G063500 Sobic007G023300--Sobic001G206200 Sobic002G338000 Sobic002G338000 Sobic007G023300--Sobic002G338000 Sobic007G023300--Sobic001G339100 Sobic007G178500 Sobic007G178500 Sobic007G023300--Sobic007G178500 Sobic007G023300--Sobic002G030200 Sobic005G021600 Sobic005G021600 Sobic010G265500--Sobic005G021600 Sobic003G187000 Sobic003G187000 Sobic010G265500--Sobic003G187000 Sobic004G343100 Sobic004G343100 Sobic010G265500--Sobic004G343100 Sobic010G218600 Sobic010G218600 Sobic010G265500--Sobic010G218600 Sobic010G265500--Sobic007G178500 Sobic009G028400 Sobic009G028400 Sobic010G265500--Sobic009G028400 Sobic001G498300 Sobic001G498300 Sobic010G265500--Sobic001G498300 Sobic008G063100 Sobic008G063100 Sobic010G265500--Sobic008G063100 Sobic001G447700 Sobic001G447700 Sobic010G265500--Sobic001G447700 Sobic004G234200 Sobic004G234200 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic002G297300 Sobic002G297300 Sobic004G193400--Sobic002G297300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic008G117400 Sobic008G117400 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic010G000500 Sobic010G000500 Sobic002G030200--Sobic010G000500 Sobic001G177000 Sobic001G177000 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic002G030200--Sobic008G063500 Sobic001G046900 Sobic001G046900 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic001G339100--Sobic009G028400 Sobic001G339100--Sobic007G023300 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic001G339100--Sobic007G178500 Sobic001G339100--Sobic005G021600 Sobic001G339100--Sobic008G063500 Sobic003G221700 Sobic003G221700 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic001G206200--Sobic002G329600 Sobic006G264201 Sobic006G264201 Sobic004G238500--Sobic006G264201 Sobic008G051000 Sobic008G051000 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic007G116950 Sobic007G116950 Sobic004G238500--Sobic007G116950 Sobic003G132100 Sobic003G132100 Sobic004G238500--Sobic003G132100 Sobic001G382100 Sobic001G382100 Sobic004G238500--Sobic001G382100 Sobic007G029300 Sobic007G029300 Sobic004G238500--Sobic007G029300 Sobic008G063500--Sobic001G177000 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic007G136900 Sobic007G136900 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic004G056900 Sobic004G056900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic008G063500--Sobic002G338000 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300
Octagon: transcription factors


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