Gene annotation
Transcriptome id Sobic.001G442300.1
Synonym ATPAP3, Sb01g041570, PAP3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Ser/Thr protein phosphatase family protein, putative, expressed
UniProt C5WRL6
Pfam PF00149
Panther DB PTHR10161 PTHR10161:SF14
NCBI CDD KOG2679; Purple (tartrate-resistant) acid phosphatase
KEGG Orthology K14379; tartrate-resistant acid phosphatase type 5
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G14700 : purple acid phosphatase 3
RAP-DB (Rice) LOC_Os03g13540.1 : Ser/Thr protein phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001498 , Zm00025a042880 , Zm00025a043164
Brachypodium -
Barley HORVU4Hr1G064380.7 , HORVU4Hr1G064380.5 , HORVU4Hr1G064380.4 , HORVU4Hr1G064380.3 , HORVU4Hr1G064380.2 , HORVU4Hr1G064360.1
Wheat TraesCS4D02G231400 , TraesCS4B02G230000 , TraesCS4B02G230000 , TraesCS4A02G073800
Populus -


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cDNA sequences
Sobic.001G442300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G211900 mapped into a stay green mQTL (QSTG meta2.7)(PubMedID : 24655390)@"1,2-diacylglycerol 3-beta-galactosyltransferase MGD2 (At)"(PubMedID : 27208977)@MGD2, putative, expressed K03715: 1,2-diacylglycerol 3-beta-galactosyltransferase
2 Sobic.001G027300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
3 Sobic.010G185200 SPX domain containing protein, putative, expressed -
4 Sobic.003G076900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Sulfoquinovosyldiacylglycerol 2, UDP-glycosyltransferase SQD2 (At)"(PubMedID : 27208977)@glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
5 Sobic.002G041100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
6 Sobic.001G454900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
7 Sobic.006G015300 expressed protein -
8 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
9 Sobic.005G105700 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
10 Sobic.010G245400 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.005G177100 glycosyl hydrolase, putative, expressed -
12 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
13 Sobic.005G162400 GATA transcription factor 25, putative, expressed -
14 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.005G206000 dirigent, putative, expressed -
16 Sobic.004G346300 expressed protein -
17 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.005G060200 cytochrome P450, putative, expressed -
19 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e


Gene co-expression network
sample Sobic001G442300 Sobic001G442300 Sobic007G211900 Sobic007G211900 Sobic001G442300--Sobic007G211900 Sobic001G027300 Sobic001G027300 Sobic001G442300--Sobic001G027300 Sobic010G185200 Sobic010G185200 Sobic001G442300--Sobic010G185200 Sobic003G076900 Sobic003G076900 Sobic001G442300--Sobic003G076900 Sobic002G041100 Sobic002G041100 Sobic001G442300--Sobic002G041100 Sobic001G454900 Sobic001G454900 Sobic001G442300--Sobic001G454900 Sobic006G015300 Sobic006G015300 Sobic001G442300--Sobic006G015300 Sobic007G177400 Sobic007G177400 Sobic001G442300--Sobic007G177400 Sobic005G105700 Sobic005G105700 Sobic001G442300--Sobic005G105700 Sobic007G211900--Sobic003G076900 Sobic007G211900--Sobic001G442300 Sobic007G211900--Sobic010G185200 Sobic007G211900--Sobic001G027300 Sobic007G190700 Sobic007G190700 Sobic007G211900--Sobic007G190700 Sobic001G504100 Sobic001G504100 Sobic007G211900--Sobic001G504100 Sobic001G259100 Sobic001G259100 Sobic007G211900--Sobic001G259100 Sobic010G211400 Sobic010G211400 Sobic007G211900--Sobic010G211400 Sobic003G183600 Sobic003G183600 Sobic007G211900--Sobic003G183600 Sobic001G027300--Sobic001G442300 Sobic010G245400 Sobic010G245400 Sobic001G027300--Sobic010G245400 Sobic001G027300--Sobic006G015300 Sobic001G027300--Sobic005G105700 Sobic001G231800 Sobic001G231800 Sobic001G027300--Sobic001G231800 Sobic005G177100 Sobic005G177100 Sobic001G027300--Sobic005G177100 Sobic005G162400 Sobic005G162400 Sobic001G027300--Sobic005G162400 Sobic010G087900 Sobic010G087900 Sobic001G027300--Sobic010G087900 Sobic001G027300--Sobic007G177400 Sobic010G185200--Sobic003G183600 Sobic001G342400 Sobic001G342400 Sobic010G185200--Sobic001G342400 Sobic006G086700 Sobic006G086700 Sobic010G185200--Sobic006G086700 Sobic001G234900 Sobic001G234900 Sobic010G185200--Sobic001G234900 Sobic010G185200--Sobic001G504100 Sobic003G327900 Sobic003G327900 Sobic010G185200--Sobic003G327900 Sobic010G185200--Sobic003G076900 Sobic006G122800 Sobic006G122800 Sobic010G185200--Sobic006G122800 Sobic001G379400 Sobic001G379400 Sobic010G185200--Sobic001G379400 Sobic003G076900--Sobic007G211900 Sobic003G076900--Sobic010G185200 Sobic004G084900 Sobic004G084900 Sobic003G076900--Sobic004G084900 Sobic003G076900--Sobic010G211400 Sobic003G076900--Sobic001G504100 Sobic003G076900--Sobic001G442300 Sobic010G083500 Sobic010G083500 Sobic003G076900--Sobic010G083500 Sobic010G165500 Sobic010G165500 Sobic003G076900--Sobic010G165500 Sobic003G076900--Sobic001G027300 Sobic001G443100 Sobic001G443100 Sobic002G041100--Sobic001G443100 Sobic006G230100 Sobic006G230100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic001G395900 Sobic001G395900 Sobic002G041100--Sobic001G395900 Sobic004G299500 Sobic004G299500 Sobic002G041100--Sobic004G299500 Sobic005G097900 Sobic005G097900 Sobic002G041100--Sobic005G097900 Sobic007G193200 Sobic007G193200 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic001G353200 Sobic001G353200 Sobic002G041100--Sobic001G353200 Sobic006G097900 Sobic006G097900 Sobic001G454900--Sobic006G097900 Sobic010G268700 Sobic010G268700 Sobic001G454900--Sobic010G268700 Sobic010G152500 Sobic010G152500 Sobic001G454900--Sobic010G152500 Sobic007G111800 Sobic007G111800 Sobic001G454900--Sobic007G111800 Sobic006G085700 Sobic006G085700 Sobic001G454900--Sobic006G085700 Sobic004G009200 Sobic004G009200 Sobic001G454900--Sobic004G009200 Sobic001G454900--Sobic007G193200 Sobic003G382200 Sobic003G382200 Sobic001G454900--Sobic003G382200 Sobic002G391900 Sobic002G391900 Sobic001G454900--Sobic002G391900 Sobic006G015300--Sobic005G105700 Sobic006G015300--Sobic005G162400 Sobic006G015300--Sobic007G177400 Sobic002G178200 Sobic002G178200 Sobic006G015300--Sobic002G178200 Sobic005G202800 Sobic005G202800 Sobic006G015300--Sobic005G202800 Sobic004G002901 Sobic004G002901 Sobic006G015300--Sobic004G002901 Sobic005G220300 Sobic005G220300 Sobic006G015300--Sobic005G220300 Sobic002G178101 Sobic002G178101 Sobic006G015300--Sobic002G178101 Sobic003G443700 Sobic003G443700 Sobic006G015300--Sobic003G443700 Sobic003G357700 Sobic003G357700 Sobic007G177400--Sobic003G357700 Sobic002G366200 Sobic002G366200 Sobic007G177400--Sobic002G366200 Sobic004G346300 Sobic004G346300 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G064500 Sobic007G064500 Sobic007G177400--Sobic007G064500 Sobic002G028632 Sobic002G028632 Sobic007G177400--Sobic002G028632 Sobic005G216400 Sobic005G216400 Sobic007G177400--Sobic005G216400 Sobic003G023600 Sobic003G023600 Sobic007G177400--Sobic003G023600 Sobic002G025500 Sobic002G025500 Sobic007G177400--Sobic002G025500 Sobic005G105700--Sobic007G177400 Sobic005G105700--Sobic006G015300 Sobic005G105700--Sobic004G002901 Sobic005G105700--Sobic003G023600 Sobic005G105700--Sobic005G202800 Sobic005G105700--Sobic004G346300 Sobic003G419200 Sobic003G419200 Sobic005G105700--Sobic003G419200 Sobic005G105700--Sobic010G245400 Sobic005G105700--Sobic005G162400
Octagon: transcription factors


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