Gene annotation
Transcriptome id Sobic.001G481800.1
Synonym Sb01g045100
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5WVR9
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF171
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT1G15170 : MATE efflux family protein
RAP-DB (Rice) LOC_Os01g31980.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a000942
Brachypodium KQK04171 , KQK04170 , KQK04831 , KQK04168 , KQK04169 , PNT70447
Barley -
Wheat TraesCS2D02G214300 , TraesCS1B02G016700 , TraesCS3B02G255200 , TraesCS3B02G255200 , TraesCS3D02G227600 , TraesCS3D02G227600 , TraesCS2B02G229100 , TraesCS1D02G009800 , TraesCS2A02G202000 , TraesCS2A02G202000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.009G201300 - -
3 Sobic.003G354600 csAtPR5, putative, expressed -
4 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.009G239200 - -
6 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
7 Sobic.002G167500 expressed protein -
8 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
9 Sobic.003G086900 C2 domain containing protein, putative, expressed -
10 Sobic.006G216100 expressed protein -
11 Sobic.010G275400 expressed protein -
12 Sobic.006G160300 DNA binding protein, putative, expressed -
13 Sobic.004G054100 protein-O-fucosyltransferase 1, putative, expressed -
14 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
15 Sobic.001G433000 FAR1 family protein, expressed -
16 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
17 Sobic.002G376600 paramyosin, putative, expressed -
18 Sobic.002G152600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
19 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
20 Sobic.009G080700 expressed protein -


Gene co-expression network
sample Sobic001G481800 Sobic001G481800 Sobic003G220800 Sobic003G220800 Sobic001G481800--Sobic003G220800 Sobic009G201300 Sobic009G201300 Sobic001G481800--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic001G481800--Sobic003G354600 Sobic003G119600 Sobic003G119600 Sobic001G481800--Sobic003G119600 Sobic009G239200 Sobic009G239200 Sobic001G481800--Sobic009G239200 Sobic004G034800 Sobic004G034800 Sobic001G481800--Sobic004G034800 Sobic002G167500 Sobic002G167500 Sobic001G481800--Sobic002G167500 Sobic001G136800 Sobic001G136800 Sobic001G481800--Sobic001G136800 Sobic003G086900 Sobic003G086900 Sobic001G481800--Sobic003G086900 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic010G074300 Sobic010G074300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic006G092400 Sobic006G092400 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000 Sobic006G219600 Sobic006G219600 Sobic009G201300--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic008G001200 Sobic008G001200 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800 Sobic003G354600--Sobic001G136800 Sobic003G354600--Sobic003G119600 Sobic002G305000 Sobic002G305000 Sobic003G354600--Sobic002G305000 Sobic004G054100 Sobic004G054100 Sobic003G354600--Sobic004G054100 Sobic001G355800 Sobic001G355800 Sobic003G354600--Sobic001G355800 Sobic010G210500 Sobic010G210500 Sobic003G354600--Sobic010G210500 Sobic003G354600--Sobic009G201300 Sobic002G181600 Sobic002G181600 Sobic003G354600--Sobic002G181600 Sobic003G354600--Sobic003G220800 Sobic003G119600--Sobic009G201300 Sobic001G439300 Sobic001G439300 Sobic003G119600--Sobic001G439300 Sobic002G325300 Sobic002G325300 Sobic003G119600--Sobic002G325300 Sobic003G119600--Sobic004G244900 Sobic002G257750 Sobic002G257750 Sobic003G119600--Sobic002G257750 Sobic005G106600 Sobic005G106600 Sobic003G119600--Sobic005G106600 Sobic004G356700 Sobic004G356700 Sobic003G119600--Sobic004G356700 Sobic003G253600 Sobic003G253600 Sobic003G119600--Sobic003G253600 Sobic003G119600--Sobic003G354600 Sobic006G216100 Sobic006G216100 Sobic009G239200--Sobic006G216100 Sobic001G405600 Sobic001G405600 Sobic009G239200--Sobic001G405600 Sobic008G051200 Sobic008G051200 Sobic009G239200--Sobic008G051200 Sobic010G140400 Sobic010G140400 Sobic009G239200--Sobic010G140400 Sobic002G347000 Sobic002G347000 Sobic009G239200--Sobic002G347000 Sobic007G017800 Sobic007G017800 Sobic009G239200--Sobic007G017800 Sobic004G185800 Sobic004G185800 Sobic009G239200--Sobic004G185800 Sobic004G171200 Sobic004G171200 Sobic009G239200--Sobic004G171200 Sobic007G105900 Sobic007G105900 Sobic009G239200--Sobic007G105900 Sobic004G034800--Sobic006G216100 Sobic010G176550 Sobic010G176550 Sobic004G034800--Sobic010G176550 Sobic003G138500 Sobic003G138500 Sobic004G034800--Sobic003G138500 Sobic002G127550 Sobic002G127550 Sobic004G034800--Sobic002G127550 Sobic003G052200 Sobic003G052200 Sobic004G034800--Sobic003G052200 Sobic001G035900 Sobic001G035900 Sobic004G034800--Sobic001G035900 Sobic007G116200 Sobic007G116200 Sobic004G034800--Sobic007G116200 Sobic008G162900 Sobic008G162900 Sobic004G034800--Sobic008G162900 Sobic010G243900 Sobic010G243900 Sobic004G034800--Sobic010G243900 Sobic003G340600 Sobic003G340600 Sobic002G167500--Sobic003G340600 Sobic008G172300 Sobic008G172300 Sobic002G167500--Sobic008G172300 Sobic003G311900 Sobic003G311900 Sobic002G167500--Sobic003G311900 Sobic002G131500 Sobic002G131500 Sobic002G167500--Sobic002G131500 Sobic005G026000 Sobic005G026000 Sobic002G167500--Sobic005G026000 Sobic004G026500 Sobic004G026500 Sobic002G167500--Sobic004G026500 Sobic010G265300 Sobic010G265300 Sobic002G167500--Sobic010G265300 Sobic001G300100 Sobic001G300100 Sobic002G167500--Sobic001G300100 Sobic002G167500--Sobic001G136800 Sobic001G136800--Sobic003G354600 Sobic005G199400 Sobic005G199400 Sobic001G136800--Sobic005G199400 Sobic010G125500 Sobic010G125500 Sobic001G136800--Sobic010G125500 Sobic003G264800 Sobic003G264800 Sobic001G136800--Sobic003G264800 Sobic001G136800--Sobic004G244900 Sobic001G136800--Sobic009G201300 Sobic001G136800--Sobic005G106600 Sobic001G136800--Sobic003G311900 Sobic002G091600 Sobic002G091600 Sobic001G136800--Sobic002G091600 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic006G225900 Sobic006G225900 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic004G174200 Sobic004G174200 Sobic003G086900--Sobic004G174200 Sobic001G016700 Sobic001G016700 Sobic003G086900--Sobic001G016700 Sobic001G390800 Sobic001G390800 Sobic003G086900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500
Octagon: transcription factors


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