Gene annotation
Transcriptome id Sobic.001G485400.1
Synonym
Functional annotation "BG1(Ortholog in rice:Liu et al., 2015)" (PubMedID : 31659849)
expressed protein
UniProt A0A1B6QQ66
Pfam -
Panther DB PTHR33541 PTHR33541:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13980 : -
RAP-DB (Rice) LOC_Os03g07920.1 : expressed protein
MaizeGDB (Corn) Zm00025a053306 , Zm00025a000884
Brachypodium PNT78047
Barley HORVU4Hr1G076120.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G291800 - -
2 Sobic.004G020401 - -
3 Sobic.007G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
4 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
5 Sobic.009G197200 - -
6 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.002G221900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
8 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.009G183500 expressed protein -
10 Sobic.009G110366 - -
11 Sobic.009G109450 - -
12 Sobic.006G068400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@B-block binding subunit of TFIIIC("PubMedID : 26759170,PubMedID : 24597475")@seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
13 Sobic.004G199600 DUF581 domain containing protein, expressed -
14 Sobic.002G212800 - -
15 Sobic.006G273100 - -
16 Sobic.001G422366 - -
17 Sobic.009G067501 - -
18 Sobic.008G065800 - -
19 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
20 Sobic.008G079100 - -


Gene co-expression network
sample Sobic001G485400 Sobic001G485400 Sobic004G291800 Sobic004G291800 Sobic001G485400--Sobic004G291800 Sobic004G020401 Sobic004G020401 Sobic001G485400--Sobic004G020401 Sobic007G132600 Sobic007G132600 Sobic001G485400--Sobic007G132600 Sobic009G180200 Sobic009G180200 Sobic001G485400--Sobic009G180200 Sobic009G197200 Sobic009G197200 Sobic001G485400--Sobic009G197200 Sobic003G034500 Sobic003G034500 Sobic001G485400--Sobic003G034500 Sobic002G221900 Sobic002G221900 Sobic001G485400--Sobic002G221900 Sobic003G044900 Sobic003G044900 Sobic001G485400--Sobic003G044900 Sobic009G183500 Sobic009G183500 Sobic001G485400--Sobic009G183500 Sobic004G291800--Sobic004G020401 Sobic004G291800--Sobic009G197200 Sobic009G110366 Sobic009G110366 Sobic004G291800--Sobic009G110366 Sobic002G212800 Sobic002G212800 Sobic004G291800--Sobic002G212800 Sobic007G112900 Sobic007G112900 Sobic004G291800--Sobic007G112900 Sobic009G109450 Sobic009G109450 Sobic004G291800--Sobic009G109450 Sobic007G130100 Sobic007G130100 Sobic004G291800--Sobic007G130100 Sobic006G273100 Sobic006G273100 Sobic004G291800--Sobic006G273100 Sobic003G057800 Sobic003G057800 Sobic004G291800--Sobic003G057800 Sobic004G020401--Sobic004G291800 Sobic004G020401--Sobic009G110366 Sobic004G020401--Sobic009G109450 Sobic004G020401--Sobic009G197200 Sobic004G020401--Sobic003G057800 Sobic004G020401--Sobic007G130100 Sobic001G479500 Sobic001G479500 Sobic004G020401--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic004G020401--Sobic003G357500 Sobic008G161401 Sobic008G161401 Sobic004G020401--Sobic008G161401 Sobic008G079100 Sobic008G079100 Sobic007G132600--Sobic008G079100 Sobic001G287301 Sobic001G287301 Sobic007G132600--Sobic001G287301 Sobic005G139800 Sobic005G139800 Sobic007G132600--Sobic005G139800 Sobic002G007250 Sobic002G007250 Sobic007G132600--Sobic002G007250 Sobic009G209800 Sobic009G209800 Sobic007G132600--Sobic009G209800 Sobic002G410200 Sobic002G410200 Sobic007G132600--Sobic002G410200 Sobic008G042250 Sobic008G042250 Sobic007G132600--Sobic008G042250 Sobic004G076732 Sobic004G076732 Sobic007G132600--Sobic004G076732 Sobic008G049701 Sobic008G049701 Sobic007G132600--Sobic008G049701 Sobic004G199600 Sobic004G199600 Sobic009G180200--Sobic004G199600 Sobic001G363100 Sobic001G363100 Sobic009G180200--Sobic001G363100 Sobic009G180200--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G180200--Sobic009G078500 Sobic007G023700 Sobic007G023700 Sobic009G180200--Sobic007G023700 Sobic009G231300 Sobic009G231300 Sobic009G180200--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic009G180200--Sobic005G130100 Sobic003G258400 Sobic003G258400 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800 Sobic009G197200--Sobic004G291800 Sobic009G197200--Sobic004G020401 Sobic009G197200--Sobic009G110366 Sobic009G197200--Sobic009G109450 Sobic008G068400 Sobic008G068400 Sobic009G197200--Sobic008G068400 Sobic009G197200--Sobic006G273100 Sobic008G091671 Sobic008G091671 Sobic009G197200--Sobic008G091671 Sobic010G144100 Sobic010G144100 Sobic009G197200--Sobic010G144100 Sobic009G197200--Sobic002G212800 Sobic003G034500--Sobic009G183500 Sobic001G516500 Sobic001G516500 Sobic003G034500--Sobic001G516500 Sobic001G032100 Sobic001G032100 Sobic003G034500--Sobic001G032100 Sobic008G126200 Sobic008G126200 Sobic003G034500--Sobic008G126200 Sobic001G247400 Sobic001G247400 Sobic003G034500--Sobic001G247400 Sobic003G296600 Sobic003G296600 Sobic003G034500--Sobic003G296600 Sobic006G194150 Sobic006G194150 Sobic003G034500--Sobic006G194150 Sobic003G034500--Sobic001G363100 Sobic001G028800 Sobic001G028800 Sobic003G034500--Sobic001G028800 Sobic002G221900--Sobic007G023700 Sobic002G108800 Sobic002G108800 Sobic002G221900--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G221900--Sobic007G156500 Sobic002G221900--Sobic003G044900 Sobic002G253500 Sobic002G253500 Sobic002G221900--Sobic002G253500 Sobic001G024200 Sobic001G024200 Sobic002G221900--Sobic001G024200 Sobic002G039500 Sobic002G039500 Sobic002G221900--Sobic002G039500 Sobic004G143700 Sobic004G143700 Sobic002G221900--Sobic004G143700 Sobic003G204000 Sobic003G204000 Sobic002G221900--Sobic003G204000 Sobic003G044900--Sobic002G221900 Sobic004G212800 Sobic004G212800 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic007G073400 Sobic007G073400 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600 Sobic009G183500--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic009G183500--Sobic003G093600 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic009G183500--Sobic002G039500 Sobic009G183500--Sobic003G034500 Sobic009G183500--Sobic008G126200 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900
Octagon: transcription factors


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