Gene annotation
Transcriptome id Sobic.001G505300.3,Sobic.001G505300.1
Synonym Sb01g047160
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
UniProt C5WXZ2
Pfam PF13639 PF05495 PF14599
Panther DB PTHR21319 PTHR21319:SF8
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K10144; RCHY1, RING finger and CHY zinc finger domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G22920 : CHY-type/CTCHY-type/RING-type Zinc finger protein
RAP-DB (Rice) LOC_Os03g05270.2 : RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23675 , KQK23677 , KQK23676 , PNT78210 , PNT78211 , PNT78212
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G505300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G359700 expressed protein -
2 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
3 Sobic.001G442200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
4 Sobic.006G232500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nuclease PA3, putative, expressed -
5 Sobic.002G123100 alpha-galactosidase precursor, putative, expressed K07407: E3.2.1.22B, galA, alpha-galactosidase
6 Sobic.010G256200 expressed protein -
7 Sobic.005G036300 expressed protein -
8 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
9 Sobic.004G332800 F-box/LRR-repeat protein 14, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
10 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
11 Sobic.006G179400 niemann-Pick C1 protein precursor, putative, expressed K12385: Niemann-Pick C1 protein
12 Sobic.001G328100 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.008G169800 galactosyltransferase family protein, putative, expressed -
14 Sobic.006G172300 MSP domain containing protein, expressed -
15 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
16 Sobic.009G151700 protein of unknown function DUF502 domain containing protein, expressed -
17 Sobic.004G345100 expressed protein -
18 Sobic.001G123201 - -
19 Sobic.001G199300 GIL1, putative, expressed -
20 Sobic.004G338800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic001G505300 Sobic001G505300 Sobic001G359700 Sobic001G359700 Sobic001G505300--Sobic001G359700 Sobic004G242000 Sobic004G242000 Sobic001G505300--Sobic004G242000 Sobic001G442200 Sobic001G442200 Sobic001G505300--Sobic001G442200 Sobic006G232500 Sobic006G232500 Sobic001G505300--Sobic006G232500 Sobic002G123100 Sobic002G123100 Sobic001G505300--Sobic002G123100 Sobic010G256200 Sobic010G256200 Sobic001G505300--Sobic010G256200 Sobic005G036300 Sobic005G036300 Sobic001G505300--Sobic005G036300 Sobic009G030400 Sobic009G030400 Sobic001G505300--Sobic009G030400 Sobic004G332800 Sobic004G332800 Sobic001G505300--Sobic004G332800 Sobic001G359700--Sobic006G232500 Sobic001G359700--Sobic002G123100 Sobic001G359700--Sobic001G505300 Sobic001G150300 Sobic001G150300 Sobic001G359700--Sobic001G150300 Sobic001G322832 Sobic001G322832 Sobic001G359700--Sobic001G322832 Sobic010G061700 Sobic010G061700 Sobic001G359700--Sobic010G061700 Sobic007G172100 Sobic007G172100 Sobic001G359700--Sobic007G172100 Sobic001G359700--Sobic001G442200 Sobic004G085800 Sobic004G085800 Sobic001G359700--Sobic004G085800 Sobic004G242000--Sobic010G256200 Sobic002G252900 Sobic002G252900 Sobic004G242000--Sobic002G252900 Sobic003G051100 Sobic003G051100 Sobic004G242000--Sobic003G051100 Sobic004G015300 Sobic004G015300 Sobic004G242000--Sobic004G015300 Sobic002G388100 Sobic002G388100 Sobic004G242000--Sobic002G388100 Sobic009G105000 Sobic009G105000 Sobic004G242000--Sobic009G105000 Sobic003G415100 Sobic003G415100 Sobic004G242000--Sobic003G415100 Sobic002G051200 Sobic002G051200 Sobic004G242000--Sobic002G051200 Sobic009G060400 Sobic009G060400 Sobic004G242000--Sobic009G060400 Sobic007G150700 Sobic007G150700 Sobic001G442200--Sobic007G150700 Sobic004G196800 Sobic004G196800 Sobic001G442200--Sobic004G196800 Sobic005G098700 Sobic005G098700 Sobic001G442200--Sobic005G098700 Sobic010G168500 Sobic010G168500 Sobic001G442200--Sobic010G168500 Sobic001G442200--Sobic007G172100 Sobic010G037200 Sobic010G037200 Sobic001G442200--Sobic010G037200 Sobic002G293100 Sobic002G293100 Sobic001G442200--Sobic002G293100 Sobic005G171800 Sobic005G171800 Sobic001G442200--Sobic005G171800 Sobic007G194100 Sobic007G194100 Sobic001G442200--Sobic007G194100 Sobic003G421900 Sobic003G421900 Sobic006G232500--Sobic003G421900 Sobic006G232500--Sobic001G359700 Sobic005G003750 Sobic005G003750 Sobic006G232500--Sobic005G003750 Sobic003G153500 Sobic003G153500 Sobic006G232500--Sobic003G153500 Sobic001G196700 Sobic001G196700 Sobic006G232500--Sobic001G196700 Sobic006G232500--Sobic007G172100 Sobic006G232500--Sobic010G037200 Sobic006G232500--Sobic010G168500 Sobic001G368900 Sobic001G368900 Sobic006G232500--Sobic001G368900 Sobic002G123100--Sobic001G150300 Sobic004G354600 Sobic004G354600 Sobic002G123100--Sobic004G354600 Sobic007G167300 Sobic007G167300 Sobic002G123100--Sobic007G167300 Sobic001G401975 Sobic001G401975 Sobic002G123100--Sobic001G401975 Sobic001G394900 Sobic001G394900 Sobic002G123100--Sobic001G394900 Sobic003G101200 Sobic003G101200 Sobic002G123100--Sobic003G101200 Sobic003G331100 Sobic003G331100 Sobic002G123100--Sobic003G331100 Sobic002G123100--Sobic001G359700 Sobic001G324800 Sobic001G324800 Sobic002G123100--Sobic001G324800 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic001G154400 Sobic001G154400 Sobic010G256200--Sobic001G154400 Sobic010G256200--Sobic009G060400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic005G036300--Sobic001G442200 Sobic005G036300--Sobic005G003750 Sobic005G226000 Sobic005G226000 Sobic005G036300--Sobic005G226000 Sobic005G036300--Sobic010G168500 Sobic010G230300 Sobic010G230300 Sobic005G036300--Sobic010G230300 Sobic003G086500 Sobic003G086500 Sobic005G036300--Sobic003G086500 Sobic005G036300--Sobic007G194100 Sobic009G025100 Sobic009G025100 Sobic005G036300--Sobic009G025100 Sobic003G036700 Sobic003G036700 Sobic005G036300--Sobic003G036700 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic004G332800--Sobic002G123100 Sobic005G074400 Sobic005G074400 Sobic004G332800--Sobic005G074400 Sobic004G210000 Sobic004G210000 Sobic004G332800--Sobic004G210000 Sobic004G191500 Sobic004G191500 Sobic004G332800--Sobic004G191500 Sobic004G332800--Sobic001G150300 Sobic001G225000 Sobic001G225000 Sobic004G332800--Sobic001G225000 Sobic004G332800--Sobic001G401975 Sobic005G062100 Sobic005G062100 Sobic004G332800--Sobic005G062100 Sobic005G194000 Sobic005G194000 Sobic004G332800--Sobic005G194000
Octagon: transcription factors


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