Gene annotation
Transcriptome id Sobic.006G179400.1
Synonym Sb06g025390
Functional annotation niemann-Pick C1 protein precursor, putative, expressed
UniProt A0A1Z5RFC6 , C6JS37
Pfam PF16414 PF02460
Panther DB PTHR10796 PTHR10796:SF117
NCBI CDD -
KEGG Orthology K12385; Niemann-Pick C1 protein
Gene Ontology GO:0016020; membrane GO:0008158hedgehog receptor activity


Orthologs (automatic annotation)
TAIR AT4G38350 : Patched family protein
RAP-DB (Rice) LOC_Os04g47590.1 : niemann-Pick C1 protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a056805
Brachypodium KQJ84057 , KQJ84058 , PNT61663 , PNT61662 , PNT61661 , PNT61660
Barley -
Wheat TraesCS2A02G404700 , TraesCS2A02G404700 , TraesCS2B02G422700 , TraesCS2B02G422700 , TraesCS2D02G401600 , TraesCS2D02G401600 , TraesCS2D02G401600 , TraesCS2D02G401600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
2 Sobic.006G015500 ZOS9-03 - C2H2 zinc finger protein, expressed -
3 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
5 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
6 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
7 Sobic.003G180100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
8 Sobic.001G373700 CW-type Zinc Finger, putative, expressed -
9 Sobic.006G022200 similar to MRP-like ABC transporter(PubMedID : 29862293)@multidrug resistance-associated protein, putative, expressed -
10 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1
11 Sobic.003G026900 expressed protein -
12 Sobic.002G390400 expressed protein -
13 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
14 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
15 Sobic.002G273000 OsFBL7 - F-box domain and LRR containing protein, expressed -
16 Sobic.009G060300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
17 Sobic.009G132650 - -
18 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
19 Sobic.002G114900 - K14290: XPO1, exportin-1
20 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase


Gene co-expression network
sample Sobic006G179400 Sobic006G179400 Sobic003G161800 Sobic003G161800 Sobic006G179400--Sobic003G161800 Sobic006G015500 Sobic006G015500 Sobic006G179400--Sobic006G015500 Sobic009G069000 Sobic009G069000 Sobic006G179400--Sobic009G069000 Sobic006G061100 Sobic006G061100 Sobic006G179400--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic006G179400--Sobic004G075700 Sobic009G030400 Sobic009G030400 Sobic006G179400--Sobic009G030400 Sobic003G180100 Sobic003G180100 Sobic006G179400--Sobic003G180100 Sobic001G373700 Sobic001G373700 Sobic006G179400--Sobic001G373700 Sobic006G022200 Sobic006G022200 Sobic006G179400--Sobic006G022200 Sobic002G254800 Sobic002G254800 Sobic003G161800--Sobic002G254800 Sobic001G373000 Sobic001G373000 Sobic003G161800--Sobic001G373000 Sobic003G161800--Sobic009G030400 Sobic003G161800--Sobic006G179400 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic005G030100 Sobic005G030100 Sobic003G161800--Sobic005G030100 Sobic009G113100 Sobic009G113100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic006G015500--Sobic006G061100 Sobic006G015500--Sobic004G075700 Sobic008G164700 Sobic008G164700 Sobic006G015500--Sobic008G164700 Sobic006G015500--Sobic006G179400 Sobic001G278700 Sobic001G278700 Sobic006G015500--Sobic001G278700 Sobic009G132600 Sobic009G132600 Sobic006G015500--Sobic009G132600 Sobic009G060300 Sobic009G060300 Sobic006G015500--Sobic009G060300 Sobic006G015500--Sobic009G113100 Sobic006G257600 Sobic006G257600 Sobic006G015500--Sobic006G257600 Sobic007G028100 Sobic007G028100 Sobic009G069000--Sobic007G028100 Sobic007G000200 Sobic007G000200 Sobic009G069000--Sobic007G000200 Sobic009G069000--Sobic006G179400 Sobic006G139100 Sobic006G139100 Sobic009G069000--Sobic006G139100 Sobic001G265600 Sobic001G265600 Sobic009G069000--Sobic001G265600 Sobic001G293700 Sobic001G293700 Sobic009G069000--Sobic001G293700 Sobic002G245000 Sobic002G245000 Sobic009G069000--Sobic002G245000 Sobic005G197100 Sobic005G197100 Sobic009G069000--Sobic005G197100 Sobic003G089000 Sobic003G089000 Sobic009G069000--Sobic003G089000 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic006G061100--Sobic009G060300 Sobic010G207400 Sobic010G207400 Sobic006G061100--Sobic010G207400 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic006G186300 Sobic006G186300 Sobic004G075700--Sobic006G186300 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic001G305100 Sobic001G305100 Sobic004G075700--Sobic001G305100 Sobic004G075700--Sobic001G278700 Sobic004G075700--Sobic003G026900 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic009G148000 Sobic009G148000 Sobic003G180100--Sobic009G148000 Sobic002G343000 Sobic002G343000 Sobic003G180100--Sobic002G343000 Sobic001G429200 Sobic001G429200 Sobic003G180100--Sobic001G429200 Sobic003G180100--Sobic003G161800 Sobic001G541400 Sobic001G541400 Sobic003G180100--Sobic001G541400 Sobic005G074400 Sobic005G074400 Sobic003G180100--Sobic005G074400 Sobic006G200901 Sobic006G200901 Sobic003G180100--Sobic006G200901 Sobic003G180100--Sobic002G390400 Sobic004G242200 Sobic004G242200 Sobic003G180100--Sobic004G242200 Sobic002G164200 Sobic002G164200 Sobic001G373700--Sobic002G164200 Sobic001G373700--Sobic006G179400 Sobic001G373700--Sobic003G161800 Sobic006G173200 Sobic006G173200 Sobic001G373700--Sobic006G173200 Sobic002G114900 Sobic002G114900 Sobic001G373700--Sobic002G114900 Sobic001G103300 Sobic001G103300 Sobic001G373700--Sobic001G103300 Sobic001G135500 Sobic001G135500 Sobic001G373700--Sobic001G135500 Sobic001G373700--Sobic008G164700 Sobic001G222000 Sobic001G222000 Sobic001G373700--Sobic001G222000 Sobic006G022200--Sobic006G179400 Sobic006G146200 Sobic006G146200 Sobic006G022200--Sobic006G146200 Sobic007G150700 Sobic007G150700 Sobic006G022200--Sobic007G150700 Sobic004G032800 Sobic004G032800 Sobic006G022200--Sobic004G032800 Sobic006G022200--Sobic001G265600 Sobic006G022200--Sobic009G069000 Sobic001G082500 Sobic001G082500 Sobic006G022200--Sobic001G082500 Sobic006G139000 Sobic006G139000 Sobic006G022200--Sobic006G139000 Sobic008G064100 Sobic008G064100 Sobic006G022200--Sobic008G064100
Octagon: transcription factors


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