Gene annotation
Transcriptome id Sobic.002G114900.1
Synonym Sb02g009800, HIT2, XPO1A, XPO1, ATCRM1, ATXPO1
Functional annotation -
UniProt C5X4C5
Pfam PF03810 PF08389 PF08767
Panther DB PTHR11223
NCBI CDD -
KEGG Orthology K14290; XPO1, exportin-1
Gene Ontology GO:0008536; Ran GTPase binding GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT5G17020 : exportin 1A
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a016289 , Zm00025a008186 , Zm00025a009124
Brachypodium KQK11998 , KQK11997 , PNT73753
Barley HORVU5Hr1G124770.23 , HORVU5Hr1G124770.22 , HORVU5Hr1G124770.21 , HORVU5Hr1G124770.20 , HORVU5Hr1G124770.27 , HORVU5Hr1G124770.26 , HORVU5Hr1G124770.25 , HORVU5Hr1G124770.24 , HORVU5Hr1G124770.29 , HORVU5Hr1G124770.28 , HORVU5Hr1G124770.30 , HORVU5Hr1G124770.32 , HORVU5Hr1G124770.33 , HORVU5Hr1G124770.34 , HORVU5Hr1G124770.35 , HORVU5Hr1G124770.36 , HORVU5Hr1G124770.18 , HORVU5Hr1G124770.19 , HORVU5Hr1G124770.12 , HORVU5Hr1G124770.13 , HORVU5Hr1G124770.10 , HORVU5Hr1G124770.11 , HORVU5Hr1G124770.16 , HORVU5Hr1G124770.17 , HORVU5Hr1G124770.14 , HORVU5Hr1G124770.15 , HORVU5Hr1G124770.2 , HORVU5Hr1G124770.4 , HORVU5Hr1G124770.5 , HORVU5Hr1G124770.6 , HORVU5Hr1G124770.7 , HORVU5Hr1G124770.8 , HORVU5Hr1G124770.9
Wheat TraesCS4A02G317800 , TraesCS5D02G568300 , TraesCS5D02G568300 , TraesCS5D02G568300 , TraesCS5D02G568300 , TraesCS4A02G317800 , TraesCS4A02G317800 , TraesCS5B02G561500 , TraesCS5B02G561500 , TraesCS4A02G317800
Populus PNS90598 , PNT07482


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478800 expressed protein -
2 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
3 Sobic.003G227100 adaptin, putative, expressed -
4 Sobic.006G126900 OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
5 Sobic.001G373700 CW-type Zinc Finger, putative, expressed -
6 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
7 Sobic.009G020500 expressed protein -
8 Sobic.002G313900 potassium transporter, putative, expressed -
9 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
10 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
11 Sobic.004G257200 phosphatidylinositol transfer, putative, expressed -
12 Sobic.002G327000 villin protein, putative, expressed -
13 Sobic.002G390400 expressed protein -
14 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
15 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
16 Sobic.006G224800 expressed protein -
17 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
18 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.001G103300 calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed K05853: P-type Ca2+ transporter type 2A
20 Sobic.003G212900 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G114900 Sobic002G114900 Sobic001G478800 Sobic001G478800 Sobic002G114900--Sobic001G478800 Sobic009G208100 Sobic009G208100 Sobic002G114900--Sobic009G208100 Sobic003G227100 Sobic003G227100 Sobic002G114900--Sobic003G227100 Sobic006G126900 Sobic006G126900 Sobic002G114900--Sobic006G126900 Sobic001G373700 Sobic001G373700 Sobic002G114900--Sobic001G373700 Sobic001G135500 Sobic001G135500 Sobic002G114900--Sobic001G135500 Sobic009G020500 Sobic009G020500 Sobic002G114900--Sobic009G020500 Sobic002G313900 Sobic002G313900 Sobic002G114900--Sobic002G313900 Sobic001G034500 Sobic001G034500 Sobic002G114900--Sobic001G034500 Sobic001G478800--Sobic002G313900 Sobic001G478800--Sobic003G227100 Sobic004G236200 Sobic004G236200 Sobic001G478800--Sobic004G236200 Sobic006G203300 Sobic006G203300 Sobic001G478800--Sobic006G203300 Sobic004G323700 Sobic004G323700 Sobic001G478800--Sobic004G323700 Sobic004G257200 Sobic004G257200 Sobic001G478800--Sobic004G257200 Sobic001G478800--Sobic002G114900 Sobic001G478800--Sobic009G208100 Sobic006G139100 Sobic006G139100 Sobic001G478800--Sobic006G139100 Sobic009G208100--Sobic002G313900 Sobic003G284000 Sobic003G284000 Sobic009G208100--Sobic003G284000 Sobic003G084000 Sobic003G084000 Sobic009G208100--Sobic003G084000 Sobic009G208100--Sobic001G478800 Sobic001G477700 Sobic001G477700 Sobic009G208100--Sobic001G477700 Sobic009G208100--Sobic006G139100 Sobic010G072800 Sobic010G072800 Sobic009G208100--Sobic010G072800 Sobic001G375600 Sobic001G375600 Sobic009G208100--Sobic001G375600 Sobic004G228800 Sobic004G228800 Sobic009G208100--Sobic004G228800 Sobic006G224800 Sobic006G224800 Sobic003G227100--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic003G227100--Sobic005G110499 Sobic003G240700 Sobic003G240700 Sobic003G227100--Sobic003G240700 Sobic001G369000 Sobic001G369000 Sobic003G227100--Sobic001G369000 Sobic003G050900 Sobic003G050900 Sobic003G227100--Sobic003G050900 Sobic004G261600 Sobic004G261600 Sobic003G227100--Sobic004G261600 Sobic008G040700 Sobic008G040700 Sobic003G227100--Sobic008G040700 Sobic006G056200 Sobic006G056200 Sobic003G227100--Sobic006G056200 Sobic003G209200 Sobic003G209200 Sobic003G227100--Sobic003G209200 Sobic007G119200 Sobic007G119200 Sobic006G126900--Sobic007G119200 Sobic002G264200 Sobic002G264200 Sobic006G126900--Sobic002G264200 Sobic002G034600 Sobic002G034600 Sobic006G126900--Sobic002G034600 Sobic009G195200 Sobic009G195200 Sobic006G126900--Sobic009G195200 Sobic003G416700 Sobic003G416700 Sobic006G126900--Sobic003G416700 Sobic006G138000 Sobic006G138000 Sobic006G126900--Sobic006G138000 Sobic007G225100 Sobic007G225100 Sobic006G126900--Sobic007G225100 Sobic006G118700 Sobic006G118700 Sobic006G126900--Sobic006G118700 Sobic010G069100 Sobic010G069100 Sobic006G126900--Sobic010G069100 Sobic002G164200 Sobic002G164200 Sobic001G373700--Sobic002G164200 Sobic006G179400 Sobic006G179400 Sobic001G373700--Sobic006G179400 Sobic003G161800 Sobic003G161800 Sobic001G373700--Sobic003G161800 Sobic006G173200 Sobic006G173200 Sobic001G373700--Sobic006G173200 Sobic001G373700--Sobic002G114900 Sobic001G103300 Sobic001G103300 Sobic001G373700--Sobic001G103300 Sobic001G373700--Sobic001G135500 Sobic008G164700 Sobic008G164700 Sobic001G373700--Sobic008G164700 Sobic001G222000 Sobic001G222000 Sobic001G373700--Sobic001G222000 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic002G390400 Sobic002G390400 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G135500--Sobic001G034500 Sobic009G020500--Sobic006G224800 Sobic009G119000 Sobic009G119000 Sobic009G020500--Sobic009G119000 Sobic009G020500--Sobic002G245000 Sobic009G255600 Sobic009G255600 Sobic009G020500--Sobic009G255600 Sobic003G062300 Sobic003G062300 Sobic009G020500--Sobic003G062300 Sobic009G126300 Sobic009G126300 Sobic009G020500--Sobic009G126300 Sobic002G422100 Sobic002G422100 Sobic009G020500--Sobic002G422100 Sobic009G020500--Sobic003G212900 Sobic002G344600 Sobic002G344600 Sobic009G020500--Sobic002G344600 Sobic009G166600 Sobic009G166600 Sobic002G313900--Sobic009G166600 Sobic002G313900--Sobic009G208100 Sobic002G313900--Sobic006G139100 Sobic002G292900 Sobic002G292900 Sobic002G313900--Sobic002G292900 Sobic006G210700 Sobic006G210700 Sobic002G313900--Sobic006G210700 Sobic002G313900--Sobic008G021000 Sobic009G249700 Sobic009G249700 Sobic002G313900--Sobic009G249700 Sobic002G313900--Sobic001G478800 Sobic002G313900--Sobic003G212900 Sobic001G034500--Sobic001G477700 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.