Gene annotation
Transcriptome id Sobic.001G535200.1,Sobic.001G535200.2
Synonym Sb01g049800
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt A0A1B6QR18
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF152
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23760 : Copper transport protein family
RAP-DB (Rice) LOC_Os10g36200.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053537
Brachypodium -
Barley HORVU4Hr1G089520.2 , HORVU4Hr1G089520.1 , HORVU4Hr1G089520.6 , HORVU4Hr1G089520.7 , HORVU4Hr1G089520.4 , HORVU4Hr1G089520.5 , HORVU4Hr1G089520.3
Wheat TraesCSU02G032600 , TraesCS4B02G393600 , TraesCS5A02G554100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G130700 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
2 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
3 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.009G259700 expressed protein -
6 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
7 Sobic.001G082400 cytochrome P450, putative, expressed -
8 Sobic.009G157900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
10 Sobic.001G253600 expressed protein -
11 Sobic.002G004700 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
12 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
13 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
14 Sobic.001G111500 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome A, putative, expressed K12120: phytochrome A
15 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
16 Sobic.010G062000 expressed protein -
17 Sobic.002G361001 - -
18 Sobic.001G111366 - -
19 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
20 Sobic.002G421400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic001G535200 Sobic001G535200 Sobic010G130700 Sobic010G130700 Sobic001G535200--Sobic010G130700 Sobic003G442500 Sobic003G442500 Sobic001G535200--Sobic003G442500 Sobic001G028700 Sobic001G028700 Sobic001G535200--Sobic001G028700 Sobic002G258100 Sobic002G258100 Sobic001G535200--Sobic002G258100 Sobic009G259700 Sobic009G259700 Sobic001G535200--Sobic009G259700 Sobic001G010400 Sobic001G010400 Sobic001G535200--Sobic001G010400 Sobic001G082400 Sobic001G082400 Sobic001G535200--Sobic001G082400 Sobic009G157900 Sobic009G157900 Sobic001G535200--Sobic009G157900 Sobic004G203100 Sobic004G203100 Sobic001G535200--Sobic004G203100 Sobic002G004700 Sobic002G004700 Sobic010G130700--Sobic002G004700 Sobic001G401300 Sobic001G401300 Sobic010G130700--Sobic001G401300 Sobic001G094400 Sobic001G094400 Sobic010G130700--Sobic001G094400 Sobic010G130700--Sobic001G535200 Sobic001G247900 Sobic001G247900 Sobic010G130700--Sobic001G247900 Sobic002G180600 Sobic002G180600 Sobic010G130700--Sobic002G180600 Sobic008G191600 Sobic008G191600 Sobic010G130700--Sobic008G191600 Sobic002G333900 Sobic002G333900 Sobic010G130700--Sobic002G333900 Sobic001G319500 Sobic001G319500 Sobic010G130700--Sobic001G319500 Sobic003G061400 Sobic003G061400 Sobic003G442500--Sobic003G061400 Sobic010G210200 Sobic010G210200 Sobic003G442500--Sobic010G210200 Sobic010G176700 Sobic010G176700 Sobic003G442500--Sobic010G176700 Sobic004G333200 Sobic004G333200 Sobic003G442500--Sobic004G333200 Sobic002G113100 Sobic002G113100 Sobic003G442500--Sobic002G113100 Sobic003G061800 Sobic003G061800 Sobic003G442500--Sobic003G061800 Sobic001G409200 Sobic001G409200 Sobic003G442500--Sobic001G409200 Sobic003G111300 Sobic003G111300 Sobic003G442500--Sobic003G111300 Sobic003G442500--Sobic001G010400 Sobic001G111366 Sobic001G111366 Sobic001G028700--Sobic001G111366 Sobic001G111500 Sobic001G111500 Sobic001G028700--Sobic001G111500 Sobic004G297400 Sobic004G297400 Sobic001G028700--Sobic004G297400 Sobic010G042900 Sobic010G042900 Sobic001G028700--Sobic010G042900 Sobic009G235900 Sobic009G235900 Sobic001G028700--Sobic009G235900 Sobic004G006300 Sobic004G006300 Sobic001G028700--Sobic004G006300 Sobic004G034400 Sobic004G034400 Sobic001G028700--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000 Sobic002G175500 Sobic002G175500 Sobic002G258100--Sobic002G175500 Sobic008G107500 Sobic008G107500 Sobic002G258100--Sobic008G107500 Sobic010G144400 Sobic010G144400 Sobic002G258100--Sobic010G144400 Sobic002G258100--Sobic001G010400 Sobic001G023200 Sobic001G023200 Sobic002G258100--Sobic001G023200 Sobic001G253600 Sobic001G253600 Sobic002G258100--Sobic001G253600 Sobic001G056700 Sobic001G056700 Sobic002G258100--Sobic001G056700 Sobic004G172700 Sobic004G172700 Sobic002G258100--Sobic004G172700 Sobic001G393800 Sobic001G393800 Sobic002G258100--Sobic001G393800 Sobic009G259700--Sobic001G253600 Sobic010G062000 Sobic010G062000 Sobic009G259700--Sobic010G062000 Sobic001G073000 Sobic001G073000 Sobic009G259700--Sobic001G073000 Sobic002G291300 Sobic002G291300 Sobic009G259700--Sobic002G291300 Sobic009G259700--Sobic004G203100 Sobic009G259700--Sobic002G180600 Sobic001G524500 Sobic001G524500 Sobic009G259700--Sobic001G524500 Sobic003G228000 Sobic003G228000 Sobic009G259700--Sobic003G228000 Sobic010G253800 Sobic010G253800 Sobic009G259700--Sobic010G253800 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G010400--Sobic001G393800 Sobic001G010400--Sobic002G258100 Sobic001G010400--Sobic002G180600 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic001G082400--Sobic001G056700 Sobic001G071100 Sobic001G071100 Sobic001G082400--Sobic001G071100 Sobic006G191600 Sobic006G191600 Sobic001G082400--Sobic006G191600 Sobic001G082400--Sobic002G291300 Sobic002G361001 Sobic002G361001 Sobic001G082400--Sobic002G361001 Sobic002G282400 Sobic002G282400 Sobic001G082400--Sobic002G282400 Sobic007G126100 Sobic007G126100 Sobic001G082400--Sobic007G126100 Sobic004G164500 Sobic004G164500 Sobic001G082400--Sobic004G164500 Sobic001G223100 Sobic001G223100 Sobic001G082400--Sobic001G223100 Sobic009G157900--Sobic004G203100 Sobic009G157900--Sobic010G144400 Sobic009G237600 Sobic009G237600 Sobic009G157900--Sobic009G237600 Sobic001G230900 Sobic001G230900 Sobic009G157900--Sobic001G230900 Sobic002G236200 Sobic002G236200 Sobic009G157900--Sobic002G236200 Sobic001G478300 Sobic001G478300 Sobic009G157900--Sobic001G478300 Sobic001G427800 Sobic001G427800 Sobic009G157900--Sobic001G427800 Sobic010G238700 Sobic010G238700 Sobic009G157900--Sobic010G238700 Sobic009G157900--Sobic010G042900 Sobic010G168600 Sobic010G168600 Sobic004G203100--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic004G203100--Sobic003G007500 Sobic002G352700 Sobic002G352700 Sobic004G203100--Sobic002G352700 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic004G203100--Sobic010G238700 Sobic009G054700 Sobic009G054700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900
Octagon: transcription factors


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