Gene annotation
Transcriptome id Sobic.002G051600.1
Synonym Sb02g004340
Functional annotation expressed protein
UniProt A0A1B6Q9B9
Pfam PF14500 PF12460
Panther DB PTHR12891
NCBI CDD KOG1967; DNA repair/transcription protein Mms19
KEGG Orthology K15075; MET18, DNA repair/transcription protein MET18/MMS19
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48120 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os07g08050.1 : expressed protein
MaizeGDB (Corn) Zm00025a045155 , Zm00025a047893 , Zm00025a047892 , Zm00025a001117 , Zm00025a058034 , Zm00025a058023
Brachypodium KQK20606 , KQK20617
Barley HORVU7Hr1G110930.7 , HORVU7Hr1G110930.6 , HORVU7Hr1G110930.5 , HORVU7Hr1G110930.4 , HORVU7Hr1G110930.3 , HORVU7Hr1G110930.2 , HORVU7Hr1G110930.1 , HORVU7Hr1G110930.9 , HORVU7Hr1G110930.8 , HORVU7Hr1G110930.19 , HORVU7Hr1G110930.18 , HORVU7Hr1G110930.17 , HORVU7Hr1G110930.16 , HORVU7Hr1G110930.15 , HORVU7Hr1G110930.14 , HORVU7Hr1G110930.13 , HORVU7Hr1G110930.12 , HORVU7Hr1G110930.11 , HORVU7Hr1G110930.10 , HORVU7Hr1G110930.26 , HORVU7Hr1G110930.24 , HORVU7Hr1G110930.25 , HORVU7Hr1G110930.22 , HORVU7Hr1G110930.23 , HORVU7Hr1G110930.20 , HORVU7Hr1G110930.21
Wheat TraesCS7B02G402800 , TraesCS7B02G402800 , TraesCS7B02G402800 , TraesCS7D02G482000 , TraesCS7D02G482000 , TraesCS7A02G494600 , TraesCS7A02G494600 , TraesCS7A02G494600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
2 Sobic.006G185200 RNA polymerase IV subunit, putative, expressed K16250: DNA-directed RNA polymerase IV subunit 1
3 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
4 Sobic.001G453500 expressed protein -
5 Sobic.010G224700 - K17680: twinkle protein
6 Sobic.004G027300 expressed protein -
7 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
8 Sobic.006G059500 expressed protein K13150: COIL, coilin
9 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
10 Sobic.001G049800 DDT domain containing protein, putative, expressed -
11 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
12 Sobic.002G112600 zinc finger family protein, putative, expressed -
13 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -
15 Sobic.003G309050 - -
16 Sobic.009G099100 rust-resistance protein Lr21, putative, expressed -
17 Sobic.004G027400 - -
18 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
19 Sobic.007G029200 myosin heavy chain-related, putative, expressed -
20 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic002G051600 Sobic002G051600 Sobic004G151000 Sobic004G151000 Sobic002G051600--Sobic004G151000 Sobic006G185200 Sobic006G185200 Sobic002G051600--Sobic006G185200 Sobic006G140400 Sobic006G140400 Sobic002G051600--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic002G051600--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic002G051600--Sobic010G224700 Sobic004G027300 Sobic004G027300 Sobic002G051600--Sobic004G027300 Sobic003G199300 Sobic003G199300 Sobic002G051600--Sobic003G199300 Sobic006G059500 Sobic006G059500 Sobic002G051600--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic002G051600--Sobic002G378100 Sobic001G049800 Sobic001G049800 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic006G111200 Sobic006G111200 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic007G060600 Sobic007G060600 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic004G151000--Sobic007G059700 Sobic006G185200--Sobic002G378100 Sobic004G085000 Sobic004G085000 Sobic006G185200--Sobic004G085000 Sobic008G017100 Sobic008G017100 Sobic006G185200--Sobic008G017100 Sobic001G214600 Sobic001G214600 Sobic006G185200--Sobic001G214600 Sobic009G213200 Sobic009G213200 Sobic006G185200--Sobic009G213200 Sobic010G147833 Sobic010G147833 Sobic006G185200--Sobic010G147833 Sobic004G223600 Sobic004G223600 Sobic006G185200--Sobic004G223600 Sobic004G260100 Sobic004G260100 Sobic006G185200--Sobic004G260100 Sobic001G145400 Sobic001G145400 Sobic006G185200--Sobic001G145400 Sobic006G140400--Sobic001G453500 Sobic006G140400--Sobic010G224700 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic010G224700--Sobic003G199300 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic002G071400 Sobic002G071400 Sobic003G199300--Sobic002G071400 Sobic008G049100 Sobic008G049100 Sobic003G199300--Sobic008G049100 Sobic003G199300--Sobic004G085000 Sobic010G205900 Sobic010G205900 Sobic003G199300--Sobic010G205900 Sobic001G429600 Sobic001G429600 Sobic003G199300--Sobic001G429600 Sobic003G199300--Sobic002G378100 Sobic009G246500 Sobic009G246500 Sobic003G199300--Sobic009G246500 Sobic003G199300--Sobic010G224700 Sobic003G199300--Sobic006G185200 Sobic006G059500--Sobic004G151000 Sobic006G059500--Sobic001G049800 Sobic002G132600 Sobic002G132600 Sobic006G059500--Sobic002G132600 Sobic006G059500--Sobic006G111200 Sobic006G059500--Sobic004G215900 Sobic006G059500--Sobic007G060600 Sobic006G059500--Sobic006G140400 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic002G378100--Sobic009G213200
Octagon: transcription factors


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