Gene annotation
Transcriptome id Sobic.002G062900.1
Synonym Sb02g005235, RPS3, RPM1
Functional annotation NB-ARC domain containing protein, expressed
UniProt A0A1B6Q9J7
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF576
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g46210.1 : NB-ARC domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK12047
Barley HORVU4Hr1G051540.1
Wheat TraesCS1B02G420400 , TraesCS1B02G420400 , TraesCS1B02G420400 , TraesCS4A02G487300 , TraesCS4A02G487300 , TraesCS7D02G007000 , TraesCS3D02G012600 , TraesCS5B02G540300 , TraesCS7D02G004800 , TraesCS7A02G006200 , TraesCS4A02G493300 , TraesCS7D02G007600 , TraesCSU02G042600 , TraesCS1D02G051400 , TraesCS7A02G007900 , TraesCS5B02G473500 , TraesCS5B02G473500 , TraesCS4B02G372900 , TraesCS7A02G004400 , TraesCS5D02G548500 , TraesCS7D02G006700 , TraesCS4A02G488400 , TraesCS3D02G012600 , TraesCS4A02G490800 , TraesCS4A02G490900 , TraesCS4A02G494100 , TraesCSU02G154500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G062800 NB-ARC domain containing protein, expressed -
2 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
3 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
4 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
5 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
6 Sobic.007G216201 - -
7 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.007G163901 - -
9 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
10 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
11 Sobic.009G006400 auxin-induced protein 5NG4, putative, expressed -
12 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
13 Sobic.003G061400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@basic helix-loop-helix, putative, expressed -
14 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
15 Sobic.003G241500 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
16 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
17 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
19 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
20 Sobic.002G415900 acyl-CoA dehydrogenase family member 10, putative, expressed K00249: ACADM, acyl-CoA dehydrogenase


Gene co-expression network
sample Sobic002G062900 Sobic002G062900 Sobic002G062800 Sobic002G062800 Sobic002G062900--Sobic002G062800 Sobic004G345800 Sobic004G345800 Sobic002G062900--Sobic004G345800 Sobic002G190500 Sobic002G190500 Sobic002G062900--Sobic002G190500 Sobic002G087800 Sobic002G087800 Sobic002G062900--Sobic002G087800 Sobic002G324000 Sobic002G324000 Sobic002G062900--Sobic002G324000 Sobic007G216201 Sobic007G216201 Sobic002G062900--Sobic007G216201 Sobic004G333200 Sobic004G333200 Sobic002G062900--Sobic004G333200 Sobic007G163901 Sobic007G163901 Sobic002G062900--Sobic007G163901 Sobic001G474500 Sobic001G474500 Sobic002G062900--Sobic001G474500 Sobic002G062800--Sobic002G062900 Sobic006G242000 Sobic006G242000 Sobic002G062800--Sobic006G242000 Sobic002G062800--Sobic004G345800 Sobic006G028100 Sobic006G028100 Sobic002G062800--Sobic006G028100 Sobic002G062800--Sobic002G190500 Sobic002G062800--Sobic007G216201 Sobic009G034700 Sobic009G034700 Sobic002G062800--Sobic009G034700 Sobic003G097100 Sobic003G097100 Sobic002G062800--Sobic003G097100 Sobic002G328500 Sobic002G328500 Sobic002G062800--Sobic002G328500 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800 Sobic002G190500--Sobic002G324000 Sobic004G113300 Sobic004G113300 Sobic002G190500--Sobic004G113300 Sobic005G130400 Sobic005G130400 Sobic002G190500--Sobic005G130400 Sobic004G050200 Sobic004G050200 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic002G190500--Sobic007G216201 Sobic002G190500--Sobic008G079300 Sobic005G024900 Sobic005G024900 Sobic002G087800--Sobic005G024900 Sobic002G087800--Sobic009G057300 Sobic002G087800--Sobic003G388251 Sobic009G226600 Sobic009G226600 Sobic002G087800--Sobic009G226600 Sobic003G241500 Sobic003G241500 Sobic002G087800--Sobic003G241500 Sobic002G087800--Sobic001G474500 Sobic002G087800--Sobic003G061800 Sobic001G305800 Sobic001G305800 Sobic002G087800--Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic002G087800--Sobic005G178100 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic001G520400 Sobic001G520400 Sobic007G216201--Sobic001G520400 Sobic007G216201--Sobic002G190500 Sobic007G216201--Sobic002G324000 Sobic007G216201--Sobic004G050200 Sobic007G216201--Sobic004G113300 Sobic007G216201--Sobic004G345800 Sobic007G216201--Sobic003G184900 Sobic007G216201--Sobic008G079300 Sobic007G216201--Sobic004G060900 Sobic003G061400 Sobic003G061400 Sobic004G333200--Sobic003G061400 Sobic004G333200--Sobic005G178100 Sobic004G333200--Sobic001G305800 Sobic007G219900 Sobic007G219900 Sobic004G333200--Sobic007G219900 Sobic004G333200--Sobic006G127100 Sobic004G333200--Sobic004G345800 Sobic004G333200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic004G333200--Sobic004G101900 Sobic004G333200--Sobic003G184900 Sobic002G084600 Sobic002G084600 Sobic007G163901--Sobic002G084600 Sobic003G111200 Sobic003G111200 Sobic007G163901--Sobic003G111200 Sobic006G226400 Sobic006G226400 Sobic007G163901--Sobic006G226400 Sobic007G163901--Sobic003G061400 Sobic010G135900 Sobic010G135900 Sobic007G163901--Sobic010G135900 Sobic005G169400 Sobic005G169400 Sobic007G163901--Sobic005G169400 Sobic009G114000 Sobic009G114000 Sobic007G163901--Sobic009G114000 Sobic007G163901--Sobic002G190500 Sobic004G320600 Sobic004G320600 Sobic007G163901--Sobic004G320600 Sobic001G474500--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic003G428400 Sobic003G428400 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700
Octagon: transcription factors


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