Gene annotation
Transcriptome id Sobic.002G219700.1,Sobic.002G219700.3,Sobic.002G219700.2
Synonym Sb02g026100
Functional annotation -
UniProt C5XDT5
Pfam -
Panther DB PTHR37207 PTHR37207:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20480 : -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G219700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G218100 expressed protein -
2 Sobic.007G184300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aspartic proteinase-like protein 2 precursor, putative, expressed -
3 Sobic.001G536200 expressed protein -
4 Sobic.003G270700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
5 Sobic.003G056400 expressed protein -
6 Sobic.009G031700 expressed protein -
7 Sobic.004G188201 - -
8 Sobic.004G013500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
9 Sobic.002G254600 expressed protein -
10 Sobic.010G096500 expressed protein -
11 Sobic.006G278900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.007G213200 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
13 Sobic.003G402400 zinc finger, C3HC4 type family protein, expressed -
14 Sobic.010G278300 OsPOP15 - Putative Prolyl Oligopeptidase homologue, expressed K01354: oligopeptidase B
15 Sobic.004G045200 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.003G374400 chloride channel protein, putative, expressed K05016: chloride channel 7
17 Sobic.010G266100 endoglucanase, putative, expressed -
18 Sobic.003G040500 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K03004: DNA-directed RNA polymerase I subunit RPA43
19 Sobic.001G190000 MYB family transcription factor, putative, expressed -
20 Sobic.001G199000 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic002G219700 Sobic002G219700 Sobic006G218100 Sobic006G218100 Sobic002G219700--Sobic006G218100 Sobic007G184300 Sobic007G184300 Sobic002G219700--Sobic007G184300 Sobic001G536200 Sobic001G536200 Sobic002G219700--Sobic001G536200 Sobic003G270700 Sobic003G270700 Sobic002G219700--Sobic003G270700 Sobic003G056400 Sobic003G056400 Sobic002G219700--Sobic003G056400 Sobic009G031700 Sobic009G031700 Sobic002G219700--Sobic009G031700 Sobic004G188201 Sobic004G188201 Sobic002G219700--Sobic004G188201 Sobic004G013500 Sobic004G013500 Sobic002G219700--Sobic004G013500 Sobic002G254600 Sobic002G254600 Sobic002G219700--Sobic002G254600 Sobic007G213200 Sobic007G213200 Sobic006G218100--Sobic007G213200 Sobic005G160900 Sobic005G160900 Sobic006G218100--Sobic005G160900 Sobic006G218100--Sobic007G184300 Sobic002G241900 Sobic002G241900 Sobic006G218100--Sobic002G241900 Sobic006G218100--Sobic003G270700 Sobic010G096500 Sobic010G096500 Sobic006G218100--Sobic010G096500 Sobic005G138900 Sobic005G138900 Sobic006G218100--Sobic005G138900 Sobic010G266100 Sobic010G266100 Sobic006G218100--Sobic010G266100 Sobic006G218100--Sobic001G536200 Sobic007G184300--Sobic003G270700 Sobic007G184300--Sobic010G096500 Sobic007G184300--Sobic006G218100 Sobic007G184300--Sobic002G241900 Sobic004G323500 Sobic004G323500 Sobic007G184300--Sobic004G323500 Sobic006G115800 Sobic006G115800 Sobic007G184300--Sobic006G115800 Sobic006G264700 Sobic006G264700 Sobic007G184300--Sobic006G264700 Sobic007G184300--Sobic007G213200 Sobic007G184300--Sobic005G160900 Sobic001G536200--Sobic006G218100 Sobic001G536200--Sobic004G188201 Sobic003G374400 Sobic003G374400 Sobic001G536200--Sobic003G374400 Sobic002G252700 Sobic002G252700 Sobic001G536200--Sobic002G252700 Sobic002G303900 Sobic002G303900 Sobic001G536200--Sobic002G303900 Sobic002G176900 Sobic002G176900 Sobic001G536200--Sobic002G176900 Sobic009G054200 Sobic009G054200 Sobic001G536200--Sobic009G054200 Sobic001G536200--Sobic009G031700 Sobic005G204900 Sobic005G204900 Sobic001G536200--Sobic005G204900 Sobic003G270700--Sobic010G096500 Sobic003G270700--Sobic007G184300 Sobic003G270700--Sobic002G241900 Sobic003G270700--Sobic007G213200 Sobic003G270700--Sobic006G218100 Sobic001G541601 Sobic001G541601 Sobic003G270700--Sobic001G541601 Sobic003G270700--Sobic005G160900 Sobic003G270700--Sobic006G115800 Sobic003G270700--Sobic006G264700 Sobic009G191800 Sobic009G191800 Sobic003G056400--Sobic009G191800 Sobic003G056400--Sobic009G031700 Sobic003G056400--Sobic004G013500 Sobic003G056400--Sobic002G254600 Sobic010G114500 Sobic010G114500 Sobic003G056400--Sobic010G114500 Sobic006G162700 Sobic006G162700 Sobic003G056400--Sobic006G162700 Sobic003G056400--Sobic004G188201 Sobic006G178700 Sobic006G178700 Sobic003G056400--Sobic006G178700 Sobic009G031100 Sobic009G031100 Sobic003G056400--Sobic009G031100 Sobic009G031700--Sobic004G188201 Sobic009G031700--Sobic004G013500 Sobic009G031700--Sobic010G114500 Sobic009G031700--Sobic006G178700 Sobic009G031700--Sobic003G056400 Sobic010G040000 Sobic010G040000 Sobic009G031700--Sobic010G040000 Sobic009G031700--Sobic009G191800 Sobic010G200800 Sobic010G200800 Sobic009G031700--Sobic010G200800 Sobic009G031700--Sobic009G031100 Sobic004G188201--Sobic009G031700 Sobic004G188201--Sobic004G013500 Sobic004G188201--Sobic003G056400 Sobic004G188201--Sobic001G536200 Sobic004G188201--Sobic010G096500 Sobic004G188201--Sobic006G178700 Sobic004G188201--Sobic006G218100 Sobic004G188201--Sobic003G270700 Sobic004G188201--Sobic010G266100 Sobic004G013500--Sobic009G191800 Sobic004G013500--Sobic009G031700 Sobic004G013500--Sobic004G188201 Sobic004G013500--Sobic003G056400 Sobic004G013500--Sobic010G114500 Sobic004G013500--Sobic002G254600 Sobic001G441800 Sobic001G441800 Sobic004G013500--Sobic001G441800 Sobic003G350100 Sobic003G350100 Sobic004G013500--Sobic003G350100 Sobic001G193400 Sobic001G193400 Sobic004G013500--Sobic001G193400 Sobic002G254600--Sobic003G056400 Sobic002G254600--Sobic009G191800 Sobic002G254600--Sobic004G013500 Sobic002G254600--Sobic009G031700 Sobic010G189800 Sobic010G189800 Sobic002G254600--Sobic010G189800 Sobic002G254600--Sobic010G114500 Sobic002G254600--Sobic004G188201 Sobic002G276700 Sobic002G276700 Sobic002G254600--Sobic002G276700 Sobic002G254600--Sobic001G441800
Octagon: transcription factors


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